Array 1 366392-367919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001580.1 Pasteurella multocida subsp. gallicida X73 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 366392 28 100.0 32 ............................ TTACGCTTACCCTCAATAACCAATGACTCATA 366452 28 100.0 32 ............................ ACAGGCTGAAGAATACAGAAAAATTAAATCAT 366512 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 366572 28 100.0 32 ............................ AAAATAACAAAGGCGATATTTACGGTTCATCT 366632 28 100.0 32 ............................ TGCTGCGTTATGTCCGATTTGCGCGAGTGCTC 366692 28 100.0 32 ............................ TGCTGGTAAAGCCTATGTAGCAGTCCTACCAT 366752 28 100.0 32 ............................ TATTTTGCGACCAGATTCAACCATGCCATTGG 366812 28 100.0 32 ............................ GTTGCTGTCAACTGCTGATGATTTTTTACTAT 366872 28 100.0 32 ............................ TGTTGGTAAAAAACTGACAGAAGTATTGATTA 366932 28 100.0 32 ............................ ACGCTGTGCGGAACGCTTAACCAGCTCATCTT 366992 28 100.0 32 ............................ ACCCAGTCACCACCCAAGCCTACAACAAGAGG 367052 28 100.0 32 ............................ TCAGAACCAAAGTTATTCGTTTGATTAATTAC 367112 28 100.0 32 ............................ CAATTTGGCGATGGTTACGAACAAAGATTAAA 367172 28 100.0 32 ............................ ATCTGGATTGCAGGGGATTCAAGGTCTGCCCG 367232 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 367292 28 100.0 32 ............................ TCTCCACCCATAACACCCGTCAAAGACCTGCC 367352 28 100.0 32 ............................ CTTTTTCCAGTCCAATATCCATGCCAGTGCGC 367412 28 100.0 32 ............................ TGATAAATTGAATATTCGGGCCCGTAGTGCTG 367472 28 100.0 32 ............................ TCACTAGTCATTCCCCATTGTGTTTTCCATTT 367532 28 100.0 32 ............................ AAAACTGCGGGAATTTATTCAAAAAGGCTACT 367592 28 100.0 32 ............................ GGCTGTTTCTAATATTGTTTTAATATCCTGTT 367652 28 100.0 32 ............................ ATTGTTGCGCGATATTGAATGATAAAGCCCGA 367712 28 100.0 32 ............................ TTCTTCTGCTCCGTTAATGTATCAACGCCAGA 367772 28 100.0 32 ............................ ATTTCAAACCTTTGAGCGTGAAAGCAGTTGGC 367832 28 100.0 32 ............................ AAAAAACCTTTCGATTAAAGAGGCGAGTGCGT 367892 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAACAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATTGGAAGAGAACGAGTTCGAATCGTAAACCCTCGCCAGTTTTTAAAACTGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGATTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAAGTGAATATCGACCTGTAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1312112-1313467 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001580.1 Pasteurella multocida subsp. gallicida X73 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1312112 36 100.0 30 .................................... GATAAATGTTCGTGGTGGTCAATATGGTAG 1312178 36 100.0 30 .................................... AACTTTATTCCATCTACTCGGGTTCCCCTC 1312244 36 100.0 30 .................................... CAAATTTGCAAATACAACACTAAACATGGC 1312310 36 100.0 30 .................................... TGTCTGCGCTTGAATTTGTCGCGTTTTCCG 1312376 36 100.0 30 .................................... CATGGAGCAAAGGGATGTCAGTTAGACCGC 1312442 36 100.0 30 .................................... ATATGACGTTGTGCTACCTCTAAAGCAGTT 1312508 36 100.0 30 .................................... GAAATGCTCGTTGAACTAGAGCAATTTGAA 1312574 36 100.0 30 .................................... ATTCTGACACACTTAACTTGAACCAAGTTT 1312640 36 100.0 30 .................................... AAAGAATACACCCTTATTCCAAAAAGTTTG 1312706 36 100.0 30 .................................... TGTAATCATATCTTCTGGCGGTTGTCCCGG 1312772 36 100.0 30 .................................... GAACGCACAGGTGATAAAAGATTTACCAAT 1312838 36 100.0 30 .................................... CTGATATGTCTTTACAAGATAACTTTCACG 1312904 36 100.0 30 .................................... ATTTTTTTAATGAAAGATGAAAGTAATTAT 1312970 36 100.0 30 .................................... TTTCAAGGTACAAACGTTGATAAACGTAGA 1313036 36 100.0 30 .................................... GTCTGAACAGTATTAACACTTCCTGTTTCT 1313102 36 100.0 30 .................................... GGGATTTTGTGTTAATTCTTTATTGTTAAA 1313168 36 100.0 30 .................................... TTTCAGCATTTTGTTGCACTAATTCTTTAA 1313234 36 100.0 30 .................................... CTGATCTAAATTTATATAATATATAAGGTA 1313300 36 100.0 30 .................................... CGTTACCAAGCAAACCCGCCATAGCGGCTG 1313366 36 100.0 30 .................................... TTTAACTGATTGTTAAGAAAGGTAGAACAA 1313432 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AAACTCCAGAGGAGTTAGGGCTAAAATCTACTATTGAACAATTAGATAAAAATAATCCAAGTAATGAAGAAGTTAGATATGGCTATGTGAAAAAAGAGGGATTTAATAAAGCAATACATGACAGCTTCAAAGATGTATCAACCAATATAGAAAAACAAAATAATAGAATCTATGATGATAAGAAATAGGAGAATTTTATATGTTAAAGAAATTAATCCTTTTCATGAAAAAATTGAGCTTGTTCTTAGATAAATTAAATGAAGAACAAAAGAAATTGAACCAAAAAGAAAAACCTCAATTTATCCGTACGAATATAAATGGATTGCCATTAAATAAAAATGGAGTTGATATAGAGGGGAATATCTATGGCTCGACAAGAAAAAGAGATTAGTCTAATAGATTACATTGATAGATAGGTTAGAAAATGAGCTTTAACGCAAAAAATATGACACAGGGCGGTCAAGTTATTAAATACATGATCGGTATGTTCATGCAGATTA # Right flank : TGTTTCTGCCCTTATCCCTTATAACACAAGGGATAAGGGCATTTTTAATACTCAAAAATTACTTAAATTTACGATATTTAGTAGTCTATTTTTAGAAATTTTTTCTTAAAAAAACAATTGATTTTGTCTAATAGAGATAGCATCTGTTGTATGTTCCCCCTGTTTCTGAGTCACTCTAGGCTAAAATAGAGAATAGTCTTTTCGTTTATTTTTATAGAGTATATAAATAGTCTACTTAGAAAAGTAGCATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTTTCAACTTCCCTAATAGAATTTTCATACCTGCAAATTGTTTTTCAGTCACTTCTAAACAGCGTATTGAACCTTCTTCTGGGAGATGATCACTGAGTCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2067209-2069096 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001580.1 Pasteurella multocida subsp. gallicida X73 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2067209 28 100.0 32 ............................ CTTTCCATTCTAAGATAAATTGTTCAAGTGAA 2067269 28 100.0 33 ............................ GATGATTATTTCGTTGTGTAGTCACAACTGCTT 2067330 28 100.0 32 ............................ AAGCTGAATAAAAGCGCTAGCTTTTTCTCATT 2067390 28 100.0 32 ............................ TTCTGTCAATTTATTTTGAGCCAATCCCCCTA 2067450 28 100.0 32 ............................ TTCTAATTCCGGTTCAGATTCTGGTAATTCTT 2067510 28 100.0 32 ............................ CTTGACCCCTTCAAACAAAAAATATGTTATCG 2067570 28 100.0 32 ............................ TGTGAGTCAAGAGTTTATGAGAAAAACAAAAT 2067630 28 100.0 32 ............................ GCCGTTTTATCATCAATTCAAAGAAGGCTTGC 2067690 28 100.0 32 ............................ CGTAGAAGGTTCGATAATCCGAATTTATGTAT 2067750 28 100.0 32 ............................ AGATAGGGTAACGCTTGTTAATTGGTTCAGTA 2067810 28 100.0 32 ............................ AACTCCAAGCTGACTGTTGCGCTAGAGCTATC 2067870 28 100.0 32 ............................ AAAAACACGAAGGAAAAATGGCATTTGTCGAA 2067930 28 100.0 32 ............................ AGATGGAACACTTCTAATTACAGATGAAGAAA 2067990 28 100.0 32 ............................ TTTGGAATCGGTGGAAGTGGTCGCCAGTGAGT 2068050 28 100.0 32 ............................ TTGAAGAATGGGAAAAAGAAGATAAAGAGCTT 2068110 28 100.0 32 ............................ ATGAGTTGTTTCTCTTTCATCTAACACTTCTT 2068170 28 100.0 32 ............................ TATATCAAACGTCACTATTATTGGTTTTGTCG 2068230 28 100.0 32 ............................ CGCAGCACAACATATTCACGCCCACGCAACAG 2068290 28 100.0 32 ............................ AAGCTTGGCTTGATGCCATGAAAAATGCACGG 2068350 28 100.0 32 ............................ ATTGGCGAACGTTGAAAAAACGGCTCTTTTTC 2068410 28 100.0 32 ............................ CGTGACCAATATCAGCGTGGCCACAAGTGAAG 2068470 28 100.0 32 ............................ ACGTGTCGATAGAAATGAGTACAAGATGAGAG 2068530 28 100.0 32 ............................ AGTAACGCACAGATTAAAAATCTGCCGCTCTA 2068590 28 100.0 32 ............................ GCTTTTATGCCGGAACAAATGAATTAACTCGA 2068650 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 2068710 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2068770 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2068830 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2068890 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2068950 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2069010 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2069070 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.0 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTGCTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAATTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCACTGGCATTCACAATCTGCTGTGCTAACTCAGATAACGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //