Array 1 493044-492350 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016226.1 Mannheimia varigena strain 177 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 493043 32 100.0 36 ................................ CCCTAATGAGGACGACGATATACGTCACCACGCGTT 492975 32 100.0 34 ................................ CGCGGCTGGCAAGTTCCGGAAAACGAAAATCCAT 492909 32 100.0 34 ................................ AAAGGTGAGTTCGTGGAAGACCTTAGTAAGACCG 492843 32 100.0 34 ................................ TCCGCATCCGTGCCGCCGACAATCTCACGCAATG 492777 32 100.0 35 ................................ AACCTCAATTTGAGAGCTGAAATCTATACTTTCGA 492710 32 100.0 34 ................................ AAACTAGACAAACTGTTGATATGGGCGGCACAAA 492644 32 96.9 33 .............T.................. TACGCAAATGCACAAATGCGATCTTTACAAGCT 492579 32 93.8 34 .............T.C................ GATGACTTTTGCCTCTTTTGCGGTAACCGGACGG 492513 32 93.8 35 ...........A.T.................. ATCATAAAATGGCTGGCAAAAGTATGGCGTAAAAC 492446 32 96.9 33 .............T.................. ACTTTAAGTAAAGAGAGACCGGAGCAAGATTTT 492381 32 87.5 0 ......................A.C..A...T | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 97.2 34 GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Left flank : CTCGCAAAGGCTTAACCATTCAACGCTATAAAGGATTAGGCGAGATGAATCCGGAGCAATTATGGGAAACCACAATGGATCCGGTTGCTCGCAAAATGTTGCAGGTAAACATTACCGATGCTATCGCTGCCGACAAACTTTTCAGCACCTTAATGGGCGATGAAGTTGAACCACGCCGTGATTTCATCGAGACTAATGCGTTATATGCCCAGATTGATGTGTAGTTTAAAATTGAGATCCTCTATTGAGAAATAGAGGATTTTTTATGAAAATTATCTAAGTATCCTACAAACACTATTGTAATATATGGGTTCGCTAACCTATAGTTCTCATTAAAATTGTAGTAGGTTAGCGATTTTACTTATTCTTTTATAATCAATATGTTATAAATTTCACCTTAAATAATTCTGATTCTGTTATACTAGAGCAACTCGTTGTATAAGAGCTTAGCGAAAATGGTACTAATAGGCCTTGTAGCACAATGATTTCTTATATAGGGA # Right flank : TTCCTATTTCTACCCCTTCTAAAATAAAACAAGGATTTTTGTTTTTCTATCCAAAATGTTACACTTCATTGAAATGAATCACTAAGGATTTTCAAAATGAGTAGTACAGAATTATTAGTCAATGTTACTCCAAGTGAAACAAGGGTTGCGTTGGTTGAAAATGGGCTATTAAAAGAGTTGCATATTGAGCGTGAGGCCAAACGTGGCATTGTGGGGAATATTTACAAAGGGCGTGTAACTCGAGTATTGCCCGGAATGCAATCTGCTTTTGTGGATATTGGTTTAGAAAAAGCGGCTTTTTTGCACGCCTCCGATATTGTTTCTCATACTGAATGTGTTGATGAAAATGAGAAAAAGCAGTTTGTAGTAAAAGATATTTCAGAGTTAGTGCGTGAAGGGCAAGACATTGTTGTTCAAGTGGTAAAAGATCCGATTGGCACAAAAGGTGCGAGGCTAACTACTGATATCACCTTGCCTTCTCGTTATTTGGTTTTTATGCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : GCAGCTACCTTCGTGTAGCTGTGAGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 655212-654980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016226.1 Mannheimia varigena strain 177 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 655211 32 100.0 33 ................................ CCTGAAATGGGGTGGTTTGTGTTGCCATATGGT 655146 32 100.0 35 ................................ GACTAATCATTGCGTTATTTTCGAAAATGCGGAAA 655079 32 100.0 36 ................................ AACCCCCTTTTTCTCTATCTGTTAAAGACATAAAAA 655011 32 71.9 0 ....TT....T.A...A..CA.A........T | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GCGGCCACCTCCGCGTGGCTGTGAGTTGAAAC # Left flank : AGCAAGGCTATGATGATGTTGATTACCTACGATATTTCTTTCGATGATCCCGAAGGGCAGAAACGCCTTCGCCACATTGCCAAACATTGCCTTGACTACGGCGTGCGAGCCCAATATTCCGTGTTCGAATGCGATGTCACCCCCGACCAGTGGATCAAGCTCAAACAAAAACTGCTGGCGACTTATAACCCTGAGCTTGACAGCCTCCGCTTTTATCATCTCGGTAGTAAATGGCGTAACAAAGTGGAACACCACGGAGCGAAAAAAGCGGTGGATTTGTTCAAAGATACGCTGATTTTGTAATATTTGGTGCATCGCTAACCTGTTGTTATCACCAAAACAGGGGGAGGTTAGCGATCATAAAAGTTCTTTAACAATCAATAAGTTATAAAAAGTATTGGCTCAATTCGAATTGTGCTATACTAAAAACACTCCCTATACAGGCGTTTAGCGAAAAGGCGCTAACAAAGCCTTGCAGCACAATGCTTTTCATATAGGGA # Right flank : CTTGGCATTCAGATATAATTTCTTAGACATTTTGTAGCTATTTTCATGTCACGATAATTGGAAATATAAATAAAGGTGCATTGCTGCACCTTTATTACTATTATTGAACCGTTGCTTTAGTACGCGACTTTTTCACTTTGATTTCCGCTTTCGGCAATACTTCAATTCCCATCGGTGGGTTTTCAAGAGCAATTGCAAGCACTTCATCAATCGTCTCTACGGCGTGAATACGTAATGCTGCTTTGGCATTTTCCGGAATTTCCTCCAAGTCTTTTTCATTCTCTTTTGGAATAATAACCGTTGTAATACCACCTCGGTGGGCTGCAAGTAATTTCTCTTTTAAGCCGCCGATTGGCAATACTTTTCCACGTAGGCTGATTTCGCCTGTCATCGCTACTTCTTTACGAACAGGGTTACCTGTTAGGCTCGAAATTAAAGCCGTACACATTGCGATACCCGCACTAGGGCCATCTTTTGGTGTTGCTCCATCGGGTACGTGA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGGCCACCTCCGCGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], //