Array 1 10979-12275 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRB01000056.1 Bacillus methanolicus strain DE0127 NODE_83_length_12376_cov_17.640459, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10979 32 100.0 33 ................................ CTGCGAAAACAGTAGGACCGCACCTTTATTTTG 11044 32 100.0 35 ................................ ATCCCGAAACCGGCTATTGACGGCTTAGTGACTAA 11111 32 100.0 35 ................................ ATTCTATTGTCGATTGTATTATGGTTGATGTGGTC 11178 32 100.0 35 ................................ GATAAAGCGCCGGAATCATTCGACATGTCGCTGTT 11245 32 100.0 35 ................................ AAAAACGAGCAGTTAAAGTTTGACAACGGGTACTT 11312 32 100.0 35 ................................ TCACCTAAATACTCCTTGTACTCAAAGGAGTCTAT 11379 32 100.0 35 ................................ CCTTATGGCTGCTTGTCTACGTCTGACCATCATAC 11446 32 100.0 35 ................................ TTTAACATTACCTCCAAACTTTCTTACTCCTTCCC 11513 32 100.0 34 ................................ CATGTACTCTTACATTTAGGACATTCGAGTTTCG 11579 32 100.0 34 ................................ CTCGAAAGTTTCGCAGAACGGTTCCCTGTCGTAG 11645 32 100.0 35 ................................ TTCAAGGTTGATGAAGCCCGGCTCACCTTCCGCTT 11712 32 100.0 35 ................................ AGTTCCGTATTTATTCCGCTACTACCGAAGCCAGC 11779 32 100.0 35 ................................ TAAATGATTAAATATGGCGCGGTAAGTGCGAATCC 11846 32 100.0 36 ................................ CTCGGTCTTTAGCCATTCCGGAATAACCATCGTCAT 11914 32 100.0 32 ................................ TTTAATAACTTGTTATCTGGTTTTTCTGATTA 11978 32 96.9 35 ...............A................ TCCAAGAAATATTATATTATAATGCTCCTCATCTG 12045 32 100.0 33 ................................ ACAAAATGATTTAATCATTTCACCCTCATAGTT 12110 32 100.0 34 ................................ GAATCTGGCTCTTTTTCATCTTTCGATAGACCAT 12176 32 100.0 36 ................................ CATAGATACAAAAACACTCAAAAAAGAGTTACCTGA 12244 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 35 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATGAATTTTTAGCCGTTCAGCGATTTTGGGTAGTGTATATCCCTCTACCATCAGTTCAATGTACTTCACCCACTTTTCAGGGTAGCGAGAGCCTGAAAATGGTGTGTTCGTCATATCATTGAAAGACTTTCCACAATCATTACATAGATAGCGTTGTCTTGAACGATATTTACCGTTCCGTTTAACTGATGTGCTTCCACAATGAACACAACCCAAACCAGAAGCAAATCGGGCTTCTCGAATGCTTTTAAGTAGTTTCGTAATTTTATCTGGTTCATCGGGAAACAAATCTTGTTTCATAGCGTTAAACAATGCCAATTGCTCCGATTTTGTTAGTTCGCTGAAATCTTCATAAATATCTTTCCACATATCCGAACGCCTCCCTAAACCCTATTATATCAACCTTTTAACAGTATGGTCAAGAAAGCAACAATCTATACGAAAACAGCCTTTTAAAATGAGAAAAAGTGTAAATTTACTTTTTTTGTTTAAAAATCGCA # Right flank : GCCTACTGGAGCCTTAAGAAAACATTTGGATTGTCAACACTAAACTAGACAGTTTTCTTAAGGTGTGTAAGTTTGTATTCCACTGGACTTAAATAATCTAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 102-1388 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRB01000010.1 Bacillus methanolicus strain DE0127 NODE_10_length_123005_cov_17.048215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 102 32 100.0 34 ................................ TTTTTGGGTGATGAAGCAGTGAGTATAACTGATG 168 32 100.0 34 ................................ GTTTAAATACTACCGCAGTGGTCGCCTCGGCAAG 234 32 100.0 34 ................................ TTTCAGGTTTCGGCATGCAAGCTGCTGAAACAAC 300 32 100.0 34 ................................ ATAGCTCTATGGTGGTTTTCATTAACTACATTAA 366 32 100.0 33 ................................ ATTGCGTGTAATAAGGATGGTGCAGTGATGAGC 431 32 100.0 33 ................................ TCCCCAGCTGGATATGGGAGAAGGCAGAAAATA 496 32 100.0 35 ................................ CAACGTGTCTATAAAGGAGTACAACCCTCCCTTAG 563 32 100.0 34 ................................ TACGTTATTTCGGCTAAACGAGAACATTATTTCC 629 32 100.0 34 ................................ ATCATCACTCAGCTTCATGCGATCCTTAAATTGC 695 32 100.0 34 ................................ TGTAATCTCTCCAGTGAGCGAGTACCCAATCAAT 761 32 100.0 35 ................................ TCGATCCGGAGTAGTAACTAAAATATCGTCATACC 828 32 100.0 33 ................................ TGTGAATTTTACCCCACGTGGATGAAGAATAAA 893 32 100.0 33 ................................ AAAACTTTATTAAAACAAATAAACGAAAGTTAT 958 32 100.0 34 ................................ TTAAATTGCTATATCCCCACCTTGGTTTATGGCT 1024 32 100.0 36 ................................ TATTAGATATCATTGTAAAAGTTTGTAAACCATCCC 1092 32 100.0 34 ................................ AGTGATGCGATCACCTAACAAAAAGATATCTAAT 1158 32 100.0 36 ................................ AGCAAAAAAGCTTCGAGAGAAATTTGGAGAACTGGC 1226 32 100.0 34 ................................ TCGCACGACATCAAACATCATAGAAGCAAATTCG 1292 32 100.0 33 ................................ TAATGTCCGGTCATAGTCTTTCGAAACTTGTAA 1357 32 96.9 0 ...........A.................... | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : ATTCTCCTCATAACTGATTAGTATAGTTCATTCTACTTGACCTTAAAATTTCTGTCTAACTAAGTGTAGCCGATCCAAAGAAATATATATGGCCATCAATCG # Right flank : TACTGTACAGTTGGGTACTAATGTAGAGATATGGATTGAAATCGTGACGGTCTACCTAAAGACGAAATGGAAATGACTGTCGAACCCTACATAAATTTCACACCAAAGGAACTAGAAAATAACACAGGAGAAGACAATGATTGTAGCGAAGATAGTAATATAATAAAATATGACTTTTCTGGTGGTGTGGATTGTGAAAAAAATTTTGACATCAAAGAAGGCTGTGCTTGGAGGCTTGTTGTTCTTGCTTATTGGCATATGGGTTTTTAGCGAAATGAGCAATCGTTTTTCCATGAAGGGGCAGGAGCCAACTGATGAAGGCTATATTGTTTTTCACAATGGTACGAAATATTTCGTTAAAGGAGAAAATATTACAGCTTCTGATTTGGAAAATTTTTCTGATGAAGATGTTACGATGTTTTCAAAAAAGTTTGAGGAAATAGCGATATTACTAGATGATGGAATGAAACTTTTAGGGACAGGAATTAAAAGTGGTGATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20177-18495 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTRB01000013.1 Bacillus methanolicus strain DE0127 NODE_16_length_89532_cov_16.588475, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 20176 32 100.0 35 ................................ GTGTTTGGGATAAACAGTACAAAAAATGGTGTGAC 20109 32 100.0 36 ................................ ATGAAATGTACGGTTGGTTATTCGGAGGGTTTATCG 20041 32 100.0 33 ................................ CTTGAGAACGTCAAAGGGCTCCTTAACCACGAA 19976 32 100.0 33 ................................ TGGAATTACGATTTTGGTGGTACTTGTTTTTAA 19911 32 100.0 33 ................................ AGAATGTGATTGGAAATATGACTAATAAGCAGC 19846 32 100.0 34 ................................ ATTGTTTACTAGCTTTAGATTATAAGGATGGTGA 19780 32 100.0 34 ................................ TGTTAAATATTCTTATGCAAAAGTTGGTGATTAT 19714 32 100.0 34 ................................ TGCCGTAGTTGTCGGTCTCAATCTTGGCGATATC 19648 32 100.0 35 ................................ GGCAAAGGGATTAAGAATGTATTTGATGGTGATAA 19581 32 100.0 33 ................................ CCTCCTAATCAACTGGACTATCATTTTGTTGCA 19516 32 100.0 34 ................................ TGAAAACCAATCAGACATTGGCGCTGACTTTGCA 19450 32 100.0 36 ................................ CGGTCTGTCCATGTCTTTAGCGGAAATACCTTCATC 19382 32 100.0 33 ................................ TGCTTGTGATGATGTGGAATATGAACTTAATTC 19317 32 100.0 33 ................................ TACTTGCATATGGGTGGAGACGCGAATATAAGC 19252 32 100.0 34 ................................ CTTCTTGTGCTTTTTGAAGCATCCCCATTCTCAC 19186 32 100.0 34 ................................ ATTATGCTGCCGGATTAGCAACTATGTATGATTT 19120 32 100.0 34 ................................ CTTTGTTTTTTGTTTTTACTGTTGATGTTTTTGC 19054 32 100.0 33 ................................ TTTTAACCAGGACTGCAAAGCTGTCTTTACTTT 18989 32 100.0 35 ................................ CGCAATCTTAATCGAGTTTATACGTTCGACCTTAC 18922 32 100.0 35 ................................ CAGAGGCGAGTCTATCGAATTATACAGTGCTCCGT 18855 32 100.0 33 ................................ TGTGATTTTTCCGTTTTCGTCAAGCTCAATCTC 18790 32 100.0 34 ................................ CCAAACATGAAGAAGAAACAGGCTCCCACAATCA 18724 32 100.0 34 ................................ AGCCATCTAGTATAATTTGTTTAGATGAATCACA 18658 32 100.0 33 ................................ ACCTGAGTATGAAAATAAGCAATTCTCAGGGGT 18593 32 100.0 35 ................................ CACTTGCACCAATTATAAAACTGTTGCCCTCTTTT 18526 32 81.2 0 ......T...A.......A...AA.....G.. | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Left flank : CGATGATCTGGATGTTTATCCCCCATTTATGTGGAGGGGATAGCTTTGTTAGTGCTTGTAACCTACGATGTGGCAATTACAACAAACGGCGGAGCGGCCAGATTGCGAAGAGTGGCTAAGATCTGTGAGCAATATGGTGTTCGAGTTCAAAATTCTGTTTTTGAATGCATCGTAGACGCGACCCAAAAAAAGAGGTTGGAAATGGATTTAATGAAGGTGATTGACCAGCAATCTGACAGTATCCGAATCTACCAGTTGGGTAATCAATACCGCAATAAAGTGAATCACATCGGCGCCAAGGAAACGCTCAATGTGGAAGACCCGCTCATCTTTTGACGTCGCTGGAAAACCTGAAGTGAACATGAAAACCCGGGGAGGTTTTCCGAGATTTTTCGTTAATTTTCCTGTTTCTGTAAGCGGATTGTGGAACTTGAATACTTCAGAGTTGAGAGTTACACAACATCTTGTGTCAAAGTATTAGTGGATTAAAAGATGTTGCG # Right flank : GAGGATATAAAATAAGAGAAGGCAATTCAATTGTATCCTCACATTCATTAAAGTTTTCACTTTTATTTCATAAAAAGTATGAATTTTAAAGTAGTTCTTCTCTCACTTTTGTAATAGAATGAAGTTATTGAAAGGGTTTTCATAAAAATGGTAACTTAGCCTGCAGTTATCAAAGGAGAGGATAATAATGAAAAAGATTATTAATGACCCTAATTTGGTAGTACAAGATATGCTGAAAGGATTAGTATCTGCTTATCCAAACAGTTTCAAACAGGTGCCAAATACAACAGTAATTGTGAGGAAGGATGCTCCGACAACTGGAAAAGTTGGTTTGGTTAGTGGTGGAGGCAGTGGACATGAGCCTGCCCATGCAGGTTATGTTGGAAAAGGGATGTTAGATGCAGCGGTGTGTGGGGAAGTATTTACTTCACCGACTCCTGATCAAGTTTATGAAGCGATTAAAGCAGTAGATGGTGGTGCTGGTGTATTTTTAATCATTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCCTCTGTATGAGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA //