Array 1 21908-20244 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOE01000114.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 86-0255 SEEH0255_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 21907 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 21846 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 21785 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 21724 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 21657 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 21596 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 21535 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 21474 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 21413 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 21352 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 21291 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 21230 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 21169 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 21108 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 21047 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 20986 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 20925 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 20864 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 20803 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 20700 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 20639 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 20578 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 20517 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 20456 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 20395 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 20334 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 20273 29 96.6 0 A............................ | A [20246] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 39291-38164 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOE01000114.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 86-0255 SEEH0255_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39290 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 39229 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 39168 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 39107 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 39046 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 38985 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 38924 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 38863 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 38802 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 38741 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT C [38736] 38679 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 38618 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 38557 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 38496 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 38435 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 38374 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 38313 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 38252 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 38191 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //