Array 1 334302-331100 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJH01000070.1 Paenibacillus glacialis strain DSM 22343 PGLA70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 334301 32 100.0 34 ................................ TACTGATCCAAAGATAGTCATTACGTATACAGTC 334235 32 100.0 33 ................................ TCGTCTTCCGCTAACTCCGCAACAACCTCTCCG 334170 32 100.0 35 ................................ AATTATATCTACGTTGGCTAATGCTGTTATCGCAA 334103 32 100.0 34 ................................ CGGATCAATGCGTGGGCGTGGCAAACTTTCACCT 334037 32 100.0 35 ................................ AGCAATTAACATGCTAATGCCCCTTTGCCATTTTT 333970 32 100.0 34 ................................ CGATCATCTGCGCTCCTGCATAGGTTTACTTGAC 333904 32 100.0 33 ................................ ACAAGCAACGCCATTACCGTCTCGATCTAGCTT 333839 32 100.0 36 ................................ AAAGACATGGACCCAGAAAACCCGCATGAGCTTACA 333771 32 100.0 33 ................................ GAATCCGTCATGGACGAATCCGCCTGTATCATC 333706 32 100.0 33 ................................ GTATTACGAAGTATTCGATTAGCCTGGTTACGG 333641 32 100.0 33 ................................ CATTTACCCATGCTCGATACGTAGCAACTACGC 333576 32 100.0 34 ................................ CTCTAACTCAACATCAGGATACAACATTTTCATC 333510 32 100.0 36 ................................ ATTTCCATGCGTTTGAGCCCTCAGAGTAGGTACAAT 333442 32 100.0 34 ................................ TAATTCTCCCTTTCCTAAACACTCTAATTCATCT 333376 32 100.0 35 ................................ TCCAATTGTTACAAGCGATGATTTGAATAATCGTG 333309 32 100.0 33 ................................ TGTACCTGTTCAAGCGTCAACGCCATATTTATT 333244 32 100.0 33 ................................ TGTAAACCCCCATTTCAGCAGTTCGACGCTCTA 333179 32 100.0 34 ................................ TTGATCTTTAAACTTATAAGCAGTAACACCCAAT 333113 32 100.0 35 ................................ TCTGTTAACAGCATCAAAAGCATCCAAAGGTACAC 333046 32 100.0 33 ................................ ATTAGTGCTTCAGGTGTTAATTCTTCGTTTGGA 332981 32 100.0 33 ................................ ATCAGATAACAGATAAATAACATTTCGATATAA 332916 32 100.0 33 ................................ AACTTCCACTCTCAGTAACTCAGTTGCCAATAT 332851 32 100.0 33 ................................ CATGGTGCCGTTATCCCCCTTGCGACTGCATAA 332786 32 100.0 34 ................................ TTCAAACGGTCAATGAACTCATCCCACGTTAAGT 332720 32 100.0 34 ................................ GTATATTCCGTGGTAACTTCCGCCTGTCCATCGT 332654 32 100.0 35 ................................ CGTTAACAACTGTTCCTTTGTTCTGTCCGGTAGTG 332587 32 100.0 34 ................................ AAGATCGCAGCAAAGGCGGATGTGTACGGACGCG 332521 32 100.0 34 ................................ CTAGTAAAATTTCCTTATTAAACATCGGGTACCG 332455 32 100.0 33 ................................ AATATAGTTTCAATTGCTTTTTCAAAGGGTTTC 332390 32 100.0 35 ................................ TGAATATGGAGCAATCACCGAATATTTAGTTTCCA 332323 32 100.0 34 ................................ CAGTTATATCAGGTCAAAAATTACCTATCCTTGT 332257 32 100.0 34 ................................ CGGCAAATCCACAAGGAAATCAAAGACCGTTGGC 332191 32 100.0 36 ................................ ACTTGTGTTAATCGGATTAGAAGTTGTGAAACCTTC 332123 32 100.0 35 ................................ TATTATGCTGCTTATAAACCATATGAAGGTCCTAA 332056 32 100.0 33 ................................ TGATTTAATATTTCCGTATAGTATCAGTTCTCC 331991 32 100.0 34 ................................ TTTCCATGGATGTTTACAGATGACAGCAGTATGA 331925 32 100.0 34 ................................ ACTCATCGCTTGTACACTCTGTAACTGTGTCATG 331859 32 100.0 35 ................................ CTACAATTGGTGCTATGGGAGAGATGAGAGTTAGA 331792 32 100.0 35 ................................ CCCTCAAATGCTAAAGCAGTCGGATAATCAAATTT 331725 32 100.0 33 ................................ CATAAGCGCGTTCAACACTACTCTCAATAATTC 331660 32 100.0 34 ................................ TTTAGACGATTGTTATTATGAAACTGAAAAGACT 331594 32 100.0 34 ................................ ACATAGTGAGTTAATACTTCTTGTTCACGTGGCG 331528 32 100.0 34 ................................ CGTAGGTGCTCTATCTGCTTTCGGTGGTGGCGGA 331462 32 100.0 36 ................................ TTCCGGAGGCTCGTATTCCATCATAGGGAGATCGTC 331394 32 100.0 34 ................................ CAAAAGTTCAGGAAACAGTTGAAGATATAGAATC 331328 31 96.9 34 ............-................... ACATAGATGAGATTGAGTTCACCGGATCGTTTGC 331263 32 100.0 34 ................................ TTCAAGATGACCATGAATTGAAGGATCTTAAAGC 331197 32 100.0 34 ................................ ATGAATGGAGCCCTCAGGTAACTTTACTGAGTCT 331131 32 90.6 0 ..........A..............CC..... | ========== ====== ====== ====== ================================ ==================================== ================== 49 32 99.7 34 GTCGCACTCTGTACGAGTGCGTGGATTGAAAT # Left flank : TGTGGAAGTAGGTGAACGGTAATTCTAGTATTGATTACGTATGATGTCAGCACGATGTCCGATGGTGGAACAAGAAGACTGAGGGTAGTCGCAAAAAAATGTGAAGACTTTGGTGTACGCGTACAAAATTCAGTCTTTGAATGTATTGTTGACTCAGCACAATTAAAAAAGTTAGAAATAGAATTAGCAGAATTAATTAATCCAGCTGTCGATAGTTTAAGGTTTTATGTACTGGGTAACAACCATAAACATAAGGTCAAACATATCGGCGCCAAGTCGAGTTTAGACGTTGAAGGGCCCCTAATTTTCTAGTGCGAACCCGAAGCACACATGAATTCCCTGGGAGGTTCGCACCAGAAAAGACTAAATAATAGCCTTTATTTGGATATTATTGGATTTACAAGCGAGGAAAAAAGGATGGATACGGATGGATACGGATGGATACGTTGATTTTCACTATAAAAACGGTGAAAATCTACTTTTTTCATTACTTTTTCGCT # Right flank : GCTTACGAAATGTGGAACGAGGTTATATGAAGAATTTGTTTGAACTAACGTTTAAGAAAATCTGAGTTGGGTTAGGGGTACACAAATGGGGATATATTGGTCACTACAGACAGAAGAGGTATGGGATCAAGCAAAAGAACTTGGGTTTTTAATTGGTCAAGAAGAATATGCGATGTATCCTAATGAGTACTTATGGATGATAGATCAAATGAAAAAGCGCATAGATGGCTACGAGGGTGAACACCCCATTTGGTTATGGATTAAGAAACCTGATATGCGTTCGACAAGTCATTTTCCAAGTCATACAAATTGTGTGAGATTGACTTTTGAACTTAATAACAAGCATGTCTTAGTTTCAGATTTTGAATCTTGGCATATGGTTCTTAATGATTCATTTTATGCTAATAATGAAAAGGAATATGATGACTTTCATTCAGGACTTTTAAATATTACAAAAGAAGAGAGCTGGAAAAGGATTTTTGATCTCAGTCGTTTACGGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTACGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 344832-343221 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVJH01000070.1 Paenibacillus glacialis strain DSM 22343 PGLA70, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 344831 32 100.0 33 ................................ TTCAGAACGATAACCAGACGTGATGCGGATCTC 344766 32 100.0 33 ................................ CCCTGACTCTTGATAGTTGTAGCTCGGTGTTTC 344701 32 100.0 34 ................................ TTCGTCGGTTAACGATAACGAACATGCGCGTTTG 344635 32 100.0 34 ................................ TCTAAGCGACAAATAAATAAAAAAAACTATGATC 344569 32 100.0 34 ................................ TCCACTTGCTGTACTATAAATAAGTGGGTTTCTT 344503 32 100.0 35 ................................ CTCGCTCTCTCAGGCGGAACGTATCAGCTCGCTCC 344436 32 100.0 34 ................................ ATTTCCCGGCAAATCCGGGGCGAAAGATGGATCA 344370 32 100.0 35 ................................ TTGGGAAAGGCTTTTGCATGAACTGCTTAACCAAG 344303 32 100.0 34 ................................ TTCTTATTATTGTTTATATATCGATGCTGTTGTT 344237 32 100.0 34 ................................ CACATTGGAATGCTATTCAACAACGCGATAGATT 344171 32 100.0 33 ................................ TTAACGGAGTCACCTACGAATCCTGCGGTTGCC 344106 32 100.0 33 ................................ TTTCAGCAAGAGATAAAGCAGAAAAGTAAGCAA 344041 32 100.0 33 ................................ TATTTTGAAGACTTACTATAGAGGGGTGCGTTT 343976 32 100.0 34 ................................ TGTGCTTGCATTGCATCATTCATTAGCTCTTGCC 343910 32 100.0 34 ................................ GTGTATCTTTTCCCCTCTTTTTCACGAACATATT 343844 32 100.0 33 ................................ TATTTTGAAGACTTACTATAGAGGGGTGCGTTT 343779 32 100.0 34 ................................ TGTGCTTGCATTGCATCATTCATTAGCTCTTGCC 343713 32 100.0 34 ................................ TGATAATTCCAAGTTGTGCGGTTTTTGTAGAAAA 343647 32 100.0 33 ................................ TTGATTTAGAAACCACAACCAATATTGAAGCGG 343582 32 100.0 32 ................................ TTTTCAACACTCGAAACATTAGCCATTTATTC 343518 32 100.0 32 ................................ TATCATTTTTTATGTAAATGAAGTTGGAATAA G [343517] 343453 32 96.9 33 ...........C.................... TCAAGGTTCGGCATTGATGGAGCAAATGTTAGC 343388 32 93.8 35 ...........C.....A.............. CAACCAAGGTGCAAGGAATGGTCGATGATGTTAAA TT [343368] 343319 32 87.5 35 ..........G.A.......C..A........ ATTAATGATACAATGTATTATGTCTCACAACTTTT 343252 32 87.5 0 .........CT..C.................A | ========== ====== ====== ====== ================================ =================================== ================== 25 32 98.6 34 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CTTTTGTAATATGTACTCAAGTTACCTGACGATGTAACCAGAGGTCTATCACTTATATCTGTGTCTTTGAACTGCTGACACTCATTATACGGTTTGTCCTAAAAACGACTTCAGGATTTAAAACGGGTTACGGGTATGCGAATTGATGATAGCATTTCTTTATAACCCAATTTATCTACGATTCGATTCACATCTTCTTCGTTAAGACGTGTTCGAATCAGGCTTGTAAACGTTTTGTTTTAAAAAAATCACAATTTAAATTACCTTATTTTGGTTGATTCGCAGGTGTGATATACTAGGAAACAATGATAAACATAAGGTGAAATATTTAGTGCGAACCGGAAGCGCACATGAAATCCCTAGGAGGTTCGCACCTAAAAAATTTGGAAAATATCTATAGTTTGGTAAATATTTGCTTTATAAGCGAAGAAAGAAGTGTAGATTTATATATTTTCACTATAAAACCGTTGAAAATTCACTTTTCACATTACTTTTTCGCA # Right flank : TATGTACTATTTAAATATGAAGAGAAAAAAGGTTTTCTTTTACTTTTTAAGTAAAAGAGGACCTTTTTTGATGTTATAAATAGATTTATTTCCCAATTCAACCAGTATATAGTATATATAATGGCTTAATAAAATATTTAAATAGAACATAGAAATAAATATTTGTTTAGATCAAAACAGGTCGTTCCTCCATCGTTTGCAAATACACGAACGTTGGCCAACTTCTTAATACTCTTAGCAAGTTCAGAATTCGCTAAACTGAGCATGAAGTTCAAGGGAATAAACGCTGGGCCGTCTAAACTATTATGCGTAAGCTCTTGTAGTCATAGAGGTAATCCTTTAAACAAACAGATACTAGAACTATTATAAATCAGTGGACATGTAATGGGAGAATGTTACAATTATATTGGAAGGTTGTGTCGATCCATGAAAGCTAAGCAAGTCAGACAGAATGTAACTCAAAATATTAGGGTAGGTAATGAACAGATTTCTGCCGTAGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //