Array 1 224645-223837 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSI01000002.1 Pseudomonas aeruginosa strain AZPAE14907 AZPAE14907_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 224644 28 100.0 32 ............................ ACGTCGTTAAGCCTGGGATGTTGCTTCAGTAC 224584 28 100.0 32 ............................ TGATGGGCAAGGTTCCAGGCCGCAATGGCGGT 224524 28 100.0 32 ............................ TCTCGCCGGGAAGTACCGGAATATCTATATGC 224464 28 100.0 32 ............................ TGAGCGGCCGAGATTTTCCAACGCGCCCAGTG 224404 28 100.0 32 ............................ TTCATGACGCTGACCTCTTCACCGCTCTTGAT 224344 28 100.0 32 ............................ CCTGGCGAAGGGCGGGATGACAAGGGCAGAGC 224284 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 224224 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 224164 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 224104 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 224044 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 223984 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 223924 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 223864 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37813-39159 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSI01000016.1 Pseudomonas aeruginosa strain AZPAE14907 AZPAE14907_contig_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37813 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 37873 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 37933 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 37993 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 38053 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38113 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38173 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38233 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38293 28 100.0 32 ............................ AAGCGGCTGCATAAGGACCCGGACAATCCGGA 38353 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38413 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38473 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38534 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38594 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 38654 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 38714 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 38774 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 38834 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 38894 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 38954 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 39014 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 39073 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 39132 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAACCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49562-48034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTSI01000016.1 Pseudomonas aeruginosa strain AZPAE14907 AZPAE14907_contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 49561 28 100.0 32 ............................ TGCCTGGATGATGCTCGGCAAGATGATGGAGG 49501 28 100.0 32 ............................ AGAGTGCGATTGCCGCAGCAGGGGAGTATAGC 49441 28 100.0 32 ............................ CAGTGCTGCGTCGTATCCCTGAACAGTGTTCC 49381 28 100.0 32 ............................ AGGAATTCACTCGCGAGCCGATCCACGATTGG 49321 28 100.0 32 ............................ TGTACAGCAGCGATACCGCAACGGCGCTGATG 49261 28 100.0 32 ............................ ATTGGCTAACAGCGGGATACGAGATTCCGCAG 49201 28 100.0 32 ............................ GGCCAGGGCAGATCGGTCTCGCGGCACTCGTA 49141 28 100.0 32 ............................ TGGCGCGACGAAGAACCGTCTGCACTCGCATA 49081 28 100.0 32 ............................ TTTGAGCAGTGGGGCGGTGGTCTGTATCGAGG 49021 28 100.0 32 ............................ ATATCCGGAGCGTAGGCGGGGACGGGCAGGGC 48961 28 100.0 32 ............................ TTCTGGTGGGCGAGGGCGGCGGGCTGAAAAGT 48901 28 100.0 32 ............................ TACCCTATGACCGGAGGCTGTTTCAGGGGGTG 48841 28 100.0 32 ............................ TATGACCACCCGCCCCGTTCGCTCGATCATCG 48781 28 100.0 32 ............................ ATCAGCTCAAGGCGCTGGGTGTTAAACGCCTT 48721 28 100.0 32 ............................ TGCAGCAGACGGTTGCGGTGCGCCCAAGACAC 48661 28 100.0 32 ............................ TTTTTGCGTCGCGGGATAGGGGAGTGTTTCGC 48601 28 100.0 32 ............................ AGTTGCGTCGTCGAAAGAGGCTCAGGCTATTT 48541 28 100.0 32 ............................ TTGGCCAGCAGCAACCCGAACTCATGGCAACT 48481 28 100.0 32 ............................ GTCACCACGACAACGGCAGGCGATGGGCTGAC 48421 28 100.0 32 ............................ TTCGATGAAATCAAGCAGTCGCCTGACTTCGG 48361 28 100.0 32 ............................ AGGTCCGTGCGGCGGCCAGGTTGGATGTCCGG 48301 28 100.0 32 ............................ AACCGCAGAAACACTAATATCAAACCTAACCC 48241 28 100.0 32 ............................ TGCGACGCCGCCGGAACGCGCGGAGCAGATCG 48181 28 100.0 32 ............................ AACAGGTCGAGTGGTATGGCCGGAAGCTGGAC 48121 28 100.0 32 ............................ GATCTGGGGCGGCATCATCACCGCAGAATCTA 48061 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 26 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCGCCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCAGGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //