Array 1 9472-10307 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAIX01000030.1 Mannheimia haemolytica strain UGA-R5-102-1 NODE_30_length_20724_cov_172.985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9472 32 93.8 36 C....................C.......... CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 9540 32 93.8 35 C....................C.......... GTGGCACAGTAACACGAGCAGATGCTGATAAACGC 9607 32 93.8 34 C....................C.......... CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG 9673 32 93.8 36 C....................C.......... TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 9741 32 93.8 34 C....................C.......... TGCGATTTTTGGATTTTTCGGGCGATAAATGATA 9807 32 96.9 34 C............................... TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG 9873 32 100.0 35 ................................ TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA 9940 32 100.0 34 ................................ TTTACCGTTTACCGATTGGATTTTAATGCTAGAG 10006 32 100.0 35 ................................ CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC 10073 32 100.0 35 ................................ CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC 10140 32 100.0 37 ................................ AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA 10209 32 100.0 35 ................................ CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG 10276 32 93.8 0 ..........T............T........ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 96.9 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA # Right flank : CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA # Questionable array : NO Score: 8.88 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : CAGCCACCTACGCGTGGCTGCGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.10,-1.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //