Array 1 661631-662619 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTB010000001.1 Pseudomonas aeruginosa strain KPA65 contig00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 661631 28 100.0 32 ............................ ACCAGGTACAGGCGCTGGCGAGTGGTCGGGTC 661691 28 100.0 32 ............................ AGGGCGGCGCGGGCTTGCCACGCGTCCCACGC 661751 28 100.0 32 ............................ TTCTCGCGCGCCTCAGCCAAGCCGAGTGCGGG 661811 28 100.0 32 ............................ GATACAGATTCCCAAGCTCATGACGAGGGTTC 661871 28 100.0 32 ............................ TTTTGCGTGCTGCTGAAGCGAGGGGTGAACTC 661931 28 100.0 32 ............................ AGCAGCAAGATCCCAAGGCGAGGGTCGTTATC 661991 28 100.0 32 ............................ TCGACGTCAACCGGGGAGTACGCGTTGGCCCA 662051 28 100.0 32 ............................ ACATGGGAATGCTCTCCTGGCACGAAGAAACG 662111 28 100.0 32 ............................ ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 662171 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 662231 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 662292 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 662352 28 96.4 32 .............T.............. CGCAACGTTCGTGATCTGCCGTTCGCCGCCCA 662412 28 96.4 32 .............T.............. TCGGCGAGGCGATCGATCATGCGAATCAGCAA 662472 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 662532 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 662592 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 634-2405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTB010000019.1 Pseudomonas aeruginosa strain KPA65 contig00019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 634 28 100.0 32 ............................ TCCGCGACCAGGTCGTAACGACCACCACACTC 694 28 100.0 32 ............................ GATCGATGACCACTTCGGCTGCCAGACACTGA 754 28 100.0 32 ............................ TTGATGGCCAGGGCGCAGGCCGGCGAGCAGAC 814 28 100.0 32 ............................ TGGAACGAACGCCAGGGCTCAGAGATCGGTAC 874 28 100.0 33 ............................ CGGATGGACAACAGCTTGATGGAATCGCTGGCC 935 28 100.0 32 ............................ GAGTACCGCGCCAAGCTGCGCGAACTGAAGAG 995 28 100.0 32 ............................ TCGCTTCAGCAGCACGCAAAAGGTCTGCTCGC 1055 28 100.0 32 ............................ TGGTCTACCGGGCATATGAGCGTTACCAGGAA 1115 28 100.0 32 ............................ GCATCATGTACGGCAGCGAGATGCCGTCCGTG 1175 28 100.0 32 ............................ TGGATGGTGATGTAGTAGGTGTCGCCGCCGAT 1235 28 100.0 32 ............................ CGACCGAGGGGAGAGTCACCAGTCCGGAAAAT 1295 28 100.0 32 ............................ AGTGGGTCAACTTCACGCCAGCACCGTCGCTC 1355 28 100.0 32 ............................ TTCGAGCCGAGCGGAAGGTCGCTGGTGTCGTA 1415 28 100.0 32 ............................ ACAGGGTGTTGTCGTTACTGCGCCAGGTTGGA 1475 28 100.0 32 ............................ TGCGTAACCAAGTGCATTTCATGGCCCTGATG 1535 28 100.0 33 ............................ CAGGAGCTGCTTCCGCCGCAGCTTGCTGCTGTT 1596 28 100.0 32 ............................ GTGGGGGCCATGCGGGGTGAGAGCCACTCCAG 1656 28 100.0 32 ............................ TTCGTCGTCGTTATCACGCCGCCGGCCGCGCG 1716 28 100.0 32 ............................ TTGAACCCCAGGTCGTTCTTCGCCAGCGCATA 1776 28 100.0 32 ............................ CAGTCGATCAGCCCAGCCAGCTTGGCGTCGTT 1836 28 100.0 32 ............................ ATGCAGATCAAGCCGGAGGACTACCTCAAGAC 1896 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 1957 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 2017 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 2077 28 100.0 33 ............................ CTGTAAGGTTCGACCCATCCCCTCTGGCCCGGA 2138 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 2198 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 2258 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 2318 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 2378 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTAAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAGAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12627-11279 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPTB010000019.1 Pseudomonas aeruginosa strain KPA65 contig00019, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12626 28 100.0 33 ............................ CTCGCGGATCGTCCTGGTGCCCCGGAAGGTGTC 12565 28 100.0 32 ............................ AATAAGGCGATGGCGGCGATGATACCGAGGGC 12505 28 100.0 32 ............................ ACCCTCATAGCCCCAACTCCTGATCGATGACC 12445 28 100.0 32 ............................ TTGTACCGGTCGGGCTCGACGCGCTCGACTAC 12385 28 100.0 32 ............................ ATTGCAGGTCGACCAGCGATGACAATCATCTG 12325 28 100.0 32 ............................ TGAGACTTGCCACAGCTCATGCAGCCGCTTCC 12265 28 100.0 32 ............................ GGCCAAGTCGAGCCTGAGCCGCGACCGGTGCG 12205 28 100.0 32 ............................ ATCACGACCACCCGAATGCATCACCAACCCAC 12145 28 100.0 32 ............................ GACGGAAAAGAAGGGCCTGGAGCGACTGGTAA 12085 28 100.0 32 ............................ CACAGGCCGTAGATGCGTCCGGTGCCCTCGAC 12025 28 100.0 32 ............................ ACGATGATCAGCTTCCACGGCGGCCGCGGCTT 11965 28 100.0 32 ............................ AACGCGTTGAACCGCTGTCGTCGGTGAACTTC 11905 28 100.0 32 ............................ ATCACGGCCACCCGAAGGCATCGCCGACCCAC 11845 28 100.0 32 ............................ AGGGCGAAATGGATGTCAAAAAAGTATTCGAA 11785 28 100.0 32 ............................ TGCAGAACCAGCGGCAGTTCCGGGGCTTTCGG 11725 28 96.4 32 .........T.................. ACAAAGAGGGCAGCGCAGACGTTTCATCACGC 11665 28 96.4 32 ..............C............. TTGATGCCAACGATGGCCCAACGCTTGTCCCC 11605 28 100.0 32 ............................ TGGCAGTGGTGCGTACGGTGACAACTTGATGA 11545 28 100.0 32 ............................ AGTAGCTCCGGCACGCTGTGCTGAGCCTGGGC 11485 28 100.0 32 ............................ CACGGATGAGAGTTCGGGTGGCAACAATCCGG 11425 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACTTG 11365 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 11306 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCACCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //