Array 1 5112576-5113865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065374.1 Pseudomonas aeruginosa strain PAG7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5112576 28 100.0 32 ............................ TCGGCTTCCCTGGCGCGCTTCTCAGTGGCTTC 5112636 28 100.0 32 ............................ TGGAACGGGTGGTGGCGGCGATGGTGATGGCG 5112696 28 100.0 32 ............................ ACAGACAGCACTCTGCGAGACGACATGAACAT 5112756 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 5112816 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 5112877 28 100.0 32 ............................ TGCAGACGCTCAACAGCGCGAACCACTACACA 5112937 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 5112997 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 5113057 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 5113117 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 5113177 28 100.0 33 ............................ TACGCCCTCGTTTGGGCCGCCATGGGCCTAGAA 5113238 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 5113298 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 5113358 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 5113418 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 5113478 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 5113538 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 5113598 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 5113658 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 5113718 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 5113778 28 100.0 32 ............................ ACTGCCCGCCGGTCGAGTGGTAGCGCATAAGG 5113838 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6444285-6445151 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065374.1 Pseudomonas aeruginosa strain PAG7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6444285 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 6444345 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 6444405 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 6444465 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 6444525 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 6444585 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 6444646 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 6444706 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 6444766 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 6444826 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 6444886 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 6444946 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 6445006 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 6445065 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 6445124 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 6454664-6453676 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065374.1 Pseudomonas aeruginosa strain PAG7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6454663 28 100.0 32 ............................ AACCACAATCCAGACCCGCGCTACCTGCGCGG 6454603 28 100.0 32 ............................ CGATGCCGGGTTCGACGGCAGCCCGATACAGA 6454543 28 100.0 32 ............................ ATGTAGCGCCGCATGACTGGGCCGAGTGACGC 6454483 28 100.0 32 ............................ TTCACTAGAGCAGCCAATCAGATTTATGTCTT 6454423 28 100.0 32 ............................ ATGTGGCCAGCATTCACTTCAGGATCCAGGCC 6454363 28 100.0 32 ............................ TCCGGGACTTCATCCGCAGGGTGGTCGTGCTC 6454303 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 6454243 28 100.0 32 ............................ CGGAGAACTGGGTCGCGCCCCGCCCGACAGCC 6454183 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 6454123 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 6454063 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 6454003 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 6453943 28 100.0 32 ............................ TTGGGAAGTACTCAAGGATCTACGCCGCACTG 6453883 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 6453823 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 6453763 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 6453703 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //