Array 1 21337-22744 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWJ01000111.1 Pseudomonas aeruginosa strain MRSN12365 MRSN12365_contig00111, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21337 28 100.0 32 ............................ ATCGCGACGACGAGGGGCGCCTCATCCATATC 21397 28 100.0 32 ............................ GAGAGGATGTCGTCGTTCAACTTAACGATCCT 21457 28 100.0 32 ............................ TCCCCAGTTCGTCGCGGTGATAGCTCATCTTC 21517 28 100.0 32 ............................ AGTCACCGGGATAATCTCCCAGCAAATGAGCC 21577 28 100.0 32 ............................ TGCTTGGGGGCTGACATGTCTGAAGCTCTTGA 21637 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 21697 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 21757 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 21817 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 21877 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 21937 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 21997 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 22057 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 22117 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 22177 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 22237 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 22297 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 22357 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 22417 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 22477 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 22537 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 22597 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 22657 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 22717 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32202-31268 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXWJ01000111.1 Pseudomonas aeruginosa strain MRSN12365 MRSN12365_contig00111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32201 28 100.0 32 ............................ ACGTTGCGCGCTGGATGTATTGGCCCTCACCT 32141 28 100.0 32 ............................ TGGAAGAAATCAAAGGTCACGCCTAGCACTGC 32081 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 32021 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 31961 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 31901 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 31841 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 31781 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 31721 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 31661 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 31601 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 31541 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 31481 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 31421 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 31361 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [31337] 31295 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //