Array 1 177318-178932 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECNS010000006.1 Salmonella enterica strain S77 S77_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 177318 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 177379 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 177440 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 177501 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 177562 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 177623 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 177684 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 177745 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 177806 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 177867 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 177928 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 177989 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 178050 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 178111 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 178172 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 178233 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 178294 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 178355 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 178416 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 178478 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 178539 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 178600 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 178661 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 178722 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 178783 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 178844 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 178905 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 195440-197970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECNS010000006.1 Salmonella enterica strain S77 S77_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 195440 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 195501 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 195562 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 195623 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 195684 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 195745 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 195806 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 195867 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 195928 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 195989 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 196050 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 196111 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 196172 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 196233 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 196294 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 196355 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 196416 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 196477 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 196538 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 196599 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 196660 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 196721 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 196782 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 196843 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 196904 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 196965 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 197026 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 197087 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 197148 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 197209 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 197270 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 197331 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 197392 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 197453 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 197514 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 197575 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 197636 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 197697 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 197758 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 197819 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 197880 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 197941 29 93.1 0 A...........T................ | A [197967] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //