Array 1 26427-25945 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000140.1 Microseira wollei NIES-4236 sequence140, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 26426 37 100.0 36 ..................................... TGAAATCCGGCAGGAGTCATATACAGCTTATCTCCC 26353 37 97.3 35 ...........A......................... GGACTGATCCACAACCGAAGTTGTGGAAGACGAGT 26281 37 100.0 36 ..................................... CCATTGTGGCTTTGGGTAAAGCCTGCAGGTTTTTGA 26208 37 97.3 41 ....................................G CGCCCATGTTCTCGGTTATTATACTTTGCGCTTCCTTCAAA 26130 37 100.0 39 ..................................... GTCATGTAGCTGAAGCAGGTCTGGAAATACATTGGTAAG 26054 37 100.0 35 ..................................... TCAAATCCGGTTGCAAGGTAATAGATCGATATTGA 25982 37 86.5 0 ..............T.T....A.......CG...... | G [25947] ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 97.3 37 GTCGCAATTCACTACTCCCCGCAAGGGGATTGAAACT # Left flank : TTGATGCAAGATCTGAATTTTAACGAACATTAGCTGTAAGATCTGGGAATTGATTCCCTGGCAAGCTCTATGTTTTTGCCAGAGGTCTATTGTCTCCCCAACTTTCCCAAACTGGGAACTCAACGCCTCGCAAGTCTTTGCAGCAGCAGAGTAGGAGATGCGATCGCTCTCCAATCTGCGACTAAATCTCTCTTGCACCGCTTGACAATTAACTCGATTAGCGAAATCATCAAAATAGTCATCAATTATTCCAATTTGAGACGCGCTGGCAAACAAAATCAAAACTTCTGCACCTTGAAAATTCAATAAATCTAAAATTTTCCGACGATCTCGGCAAATGGCTGCAACCCTTGTTCTTACGTGGAGATGCTCGGTGTATTGTCCTGTAACGATTTGAGAGCGTTTTTGATAATGAGAATCGCTCATTTGTAGCCACTAAATCAGAGGTCGTCGGAAATGGCCTCTAGAACTCTTACAGGGTAAGGGTTTCAAATCGAGGG # Right flank : AACCAGAAAAATTTGGAATCGCACGCTTCCAGGATGAGGGATAGTAGAAAAGCGATCGCACACAGGTATGCAAAAATGCTCAACCCACCTTGGAGCGACCCACCCAGCGTAGAATTACTGCAATGGCTGGCGCGGGGAAATTTAAAACAACAACTGCTACAAGCGGTGCGCTTGTGGGTGTGGCTGCATTTTCTGTATGGGGAAGCAGGAACTAAGCTCAATTTACCCGATCCGTTTGGCTATGCGGATTGGCGGGATGCTTTCTTCAGCGAAACGCACACAAAGAGGGAAGAAAAACCCAGACTGCACGACTTGCAATGTTTCTGTGCAAAAACTGTTGCGGCTTGGTTATTTAGTCCCAATCTCAATTTAACCCAGTTGGAATGGGAAACTTTGTTGCAGGAAAGCAAGGAAGCGTCGCAAGTCGAACAACAGCAGCAGCAATTTGAACAATCCCTTATCCAGCACCATCTCTGTCCGGATAACCTGCACAAATTGTA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAATTCACTACTCCCCGCAAGGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 21760-16146 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000015.1 Microseira wollei NIES-4236 sequence015, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 21759 37 100.0 35 ..................................... ATTTCAGTAAATTACCCAGATGGTAGTTCTTCCAT 21687 37 100.0 36 ..................................... ATAAGGCGTAGTACCAAGTGGTGCGCACTGAATACT 21614 37 100.0 33 ..................................... AGAAGAGTCTTTCTGGGTCTTTGAAATAATCAA 21544 37 100.0 36 ..................................... ATGATGACTCAATTATGGCTGCTGCCATAAGCTTTT 21471 37 100.0 37 ..................................... CTTGTCTACCCAAGGCCACGTTTGGCTTGACACCTGT 21397 37 100.0 34 ..................................... AAAGACATGCTCGCATCAGAACAGGCACTTCACG 21326 37 100.0 35 ..................................... ACCAATCGTCCAACATACAACCCCGGCAGTACCGT 21254 37 100.0 34 ..................................... TGGCAAATTGGCTTTTGCTAACTGTTTCAGGTTG 21183 37 100.0 37 ..................................... GGATAACGAATTTCAACTTCGTGAACAGGCCGCCCAG 21109 37 100.0 33 ..................................... AGATGGAGGAGAGGTTGTAATCACAGACTGAAG 21039 37 100.0 34 ..................................... TTTATGCTGCCGATTTAGCTAGCGCGGGCTGCCC 20968 37 100.0 34 ..................................... ATTGACCCAGCGCTCGCTGCTTCCCAAAACAAAC 20897 37 100.0 36 ..................................... ATATCCACTTCTGTGGTACTACTAACATACATATCA 20824 37 100.0 38 ..................................... CAGTAGACTCCTGAAGCGCTGCTTGCTGCTTTCTACGC 20749 37 100.0 36 ..................................... ATGTACAACGGACGGGATAAAGTCGCCTGTGCCTTT 20676 37 100.0 35 ..................................... GGGCGCTGGAGTAGCAGCCTCCACCGGCTTTTCTG 20604 37 100.0 34 ..................................... GGAATGAAGATTCGCTTTACCGCCAGCTACTTGG 20533 37 100.0 35 ..................................... ACAAGCAAAGTAGATGGTACTCGATACCCGCTCTA 20461 37 100.0 36 ..................................... CCCTGCGATTGCTCCTCAACTTCCAAGCGGAAGTCA 20388 37 100.0 34 ..................................... TCGACGTTACGGGTCAATCCTATCTTGTACTCAG 20317 37 100.0 35 ..................................... TCATCCGAGACCGCTGAGTTTGCGCCCATGTTTCT 20245 37 100.0 36 ..................................... ATTTATCTCTCGCTTATTCGGCAAGAAACGCGACTC 20172 37 100.0 35 ..................................... ATTAATTAATTCATCATTAACCAACAGTTCATCTG 20100 37 100.0 36 ..................................... TAAATCTGAACGTCCATCCCCTTCCAAGGTGCCACC 20027 37 100.0 36 ..................................... AAAAATGACGCTGAGACAAAAGCAAAAGCCTTCTTT 19954 37 100.0 35 ..................................... TGGGTAAATCCAAATAGGCTGTTTCAACCAGGTTC 19882 37 100.0 36 ..................................... ATTGCTTCCGGATTGAATCAATGGGCATATCCACGT 19809 37 100.0 36 ..................................... CTCTCTTGTGCTGGCATACCCGCTGGTATTTGTCAC 19736 37 100.0 34 ..................................... AAAGGTTTCCTGAAATACTCGAATTTCTTCCTGA 19665 37 100.0 36 ..................................... GACATTTGTTTTATCAGTTGGTGAAGGTGTTGTTGA 19592 37 100.0 36 ..................................... TACAAGACAGATATAGTTGAAGAAAAAGGTTTTTGG 19519 37 100.0 36 ..................................... AAAGCTATCTGGCTTGACCTCCTGCGAACTAAGTGG 19446 37 100.0 36 ..................................... GGGCAAGTTTTGGATCGCTGGCATGGACGGTAACGA 19373 37 100.0 34 ..................................... AAGGAATGAGCTTCTACTTAGTTCTCAATCGAAA 19302 37 100.0 33 ..................................... AGAGTTAGCGGCTGTCAACCTGCGATCGCGCGA 19232 37 100.0 35 ..................................... GAGAATTCCTATTTGTCTATGAGTATATTCTTCGC 19160 37 100.0 37 ..................................... GCGAGCCATGAGAGTAGAAAGGAGAGGATAATGCCTG 19086 37 100.0 32 ..................................... TGACCATTATTACGCCTACAAAAAAGAGATGC 19017 37 100.0 35 ..................................... GCAAACAGGAACCACTCTGTATATCTGGGTAAAAA 18945 37 100.0 35 ..................................... GTATGAGCCAACGGGGACTGGCACGAGCATGTGGG 18873 37 100.0 36 ..................................... ATTGAAAGGCAGCTCCAGCTAGAGGGAGCCAAAGAT 18800 37 100.0 36 ..................................... GGATTTACCTTTCTCAAGCAAGGATTTTTCCTCTGC 18727 37 100.0 35 ..................................... CTTTTTTGTTTGCTTGTGGAAAGTTTATCTCTAGA 18655 37 100.0 34 ..................................... AGGAAGATTCAGCCCCCTGATATTGTTTCGTCGA 18584 37 100.0 35 ..................................... TGTGAGCCATTCACTCGTTGCTAGGGGCTGATAAA 18512 37 100.0 36 ..................................... GATGAACTTGCTGGTAAGTTTAAGTCTGCCAATATG 18439 37 100.0 35 ..................................... ACGTCACCACCGCTATCCCCATCTAGTTTTACCCG 18367 37 100.0 36 ..................................... GAAGGAGAGCGCGTCGCTGCTGCCCTTGAGTACGAG 18294 37 100.0 36 ..................................... ATTTGACAAAACCCTTTAGGCACTGGCGCAATAACG 18221 37 100.0 37 ..................................... GAAGTACAGAAAAAGCGGGGACGGCTCCCGACGTAGA 18147 37 100.0 35 ..................................... CGATGCGTACTTGTAGCATTCGGCGCAATGAATGG 18075 37 100.0 35 ..................................... TTGCAAAGAAAGTAAACTACCTCTCTCCATAGCTA 18003 37 100.0 37 ..................................... AAATCCTTTAGACACTCGCTAAGAAAGCGAGTGTCGA 17929 37 100.0 35 ..................................... TTAGAGGTTCGCTCCAGGTCTGTCTCAAGCCATTC 17857 37 100.0 34 ..................................... GCGAAGCTCCAGGCGGAGCAAGCCAACCTAGAAA 17786 37 100.0 38 ..................................... TGGAAAAATAAAATTATTCCAGAAAAGCCTCCCTCACC 17711 37 100.0 33 ..................................... ATTACCAGAGAGGCCGTTGCTTTTTTTGATAAA 17641 37 100.0 34 ..................................... TGATGTGCCTCCAGCCCCCACGAATGTTGATGAT 17570 37 100.0 37 ..................................... CTCGGCAACCCCCATGGCGTTTTTGGCGGTCTTCAGT 17496 37 100.0 35 ..................................... TTCGACGAAGCTGCGGCCGACGCTTGCGCAACAGG 17424 37 100.0 36 ..................................... CCATTCAGCACCTTTCTAATAGATAACAAAACAAAA 17351 37 100.0 35 ..................................... TTCTCTATATCCGAGAACGAGATAGCCGCCGCCAT 17279 37 100.0 35 ..................................... TAATAGCTTGCCCACAAAAGCAGCCGCGGCACGGT 17207 37 100.0 34 ..................................... ATAGAGATACTCATCAAACACGCCGCCAATCTGC 17136 37 100.0 34 ..................................... TTCCACTTAGTTGTCCATCCAGGCGATACACCCG 17065 37 100.0 36 ..................................... CAAGGGGAATATTCGGTTAGTTACGGGTCACTCTCT 16992 37 100.0 35 ..................................... TCATGGTCTGCGCCTTTGTTTATACGGACATTTGG 16920 37 100.0 36 ..................................... GATGGATATTACTCTATCTATGGGCGATACCTTTCG 16847 37 100.0 34 ..................................... TTTAATGGAAAGAGCGATGCGTTGAACTTCATTG 16776 37 100.0 34 ..................................... GAATACCCACGGCTTCGAGTGCGTGAACCAAGTT 16705 37 100.0 42 ..................................... CAAGCGCTGAGCTGGCGTATGCTACCCCACGACAAAGGTTGC 16626 37 100.0 35 ..................................... AATAAATAAGACAGACACGGAGGGAATAGACCGTG 16554 37 100.0 39 ..................................... CTTTAAGCAGTCACACAATGATATTAAAATTATCGAGGG 16478 37 100.0 41 ..................................... GATTTAATTAGTAAATTCGGCTCAGCGTGGAAAGAATCTAT 16400 37 100.0 35 ..................................... TATTAAATCTGTGCTGTTGGCTTTGCCAAATACAC 16328 37 100.0 36 ..................................... GAGAAGCCGAAACATTACAATTAATGCTTGTGGGTT 16255 37 100.0 36 ..................................... AAGCCATCTCAAGTTCATCGACATGTGCCGGGAAAG 16182 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 78 37 100.0 35 GTTGCAACTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : TTCCAGAAGATAAGCGCCGGACTAAGATCCATAAAGCGCTAAAGTCTTACGGACAGTGGATGCAATATTCGATCTTTGAGTGCGAACTAACTCCAACCCAATATGCTAAGTTAAGATCGCGCCTCGCCAAGTTAATTAAACCGAAGGAAGACAGCATCCGCTTTTACTTCCTGTGCGCCTGCTGTCAGGGTAAAGTCGAACGCATCGGTGGCGAGATGCCAATGGACACGACGGTGTTTTTTGCCTAAACTCCGGGAGAGGGTAGGTGTAAAAAATGGAGGATGAAATTTTTCGGCCCAAACCTTTACCCCACAAGCTTTTGACCCCCCTCTCCCCAAAAATTCTCTCCCGGTACTTCTGAAACTATTGCTACGACTGCGATCAAGCGCGATCGCTTCAGCGAGAGCTTGACAGGTCGAAGCCTGAAATGGTAATTTTAATATTGTCTCCCGGTAACGAACCTTGAAAACCTCATACAGTAAGCATTCTAGAGCCGGTCG # Right flank : TTAATTAAGCATCAAAATCTCTTTCCCGCTGACGTGCCGACTCAACAGCAATCCATAAACGGCTATACTCATCGCGGACAGATGCATCAATTTGTTCTGCTAACTCAGCGGGAAGATTTAGGACTCGAATCATATCATGTCCTTAGGCAACGGTTGTGTAACTGCTAATAGCTAATCGCTAATGGCGGCTGTCTGGCAATTGACAATTATCAATGAGCAATTAGCAATTGCCATCACCAGGAAATTCACCTGTGGTAATAATCTCCACTCGGACATTTGTTTGCGTATCGCGAAACATTTTTGTAGCGCCTGGAAACGCAGGTACAAATCCTCGTCCGACTAATGCCTTGCGAAACGCTTCCAGTCCCTCTTTACTCAGGAGTAGATCCACATCTTGAGTTGCCCGAACATAACCATAAGTCACCAAAGCCATGCCGCCAATGATGGCATAATCAATCCCAGCTTTAGATAGGCTCTGAGAAATATTTTGTAAGGTCTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 26082-19807 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000018.1 Microseira wollei NIES-4236 sequence018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 26081 37 94.6 34 ............CA....................... ACAACAAGGTGCCATAAAACTAGAGAAGATGCGC 26010 37 94.6 36 ............CA....................... GCTCATGCGCATAAGCGACCATGGAAGCAATTCCTG 25937 37 94.6 37 ............CA....................... TCTTTTGTGATGTTCGGCGCCTGGGGTTTCTGCGTCT 25863 37 94.6 36 ............CA....................... ACTGGAGGTTCCCTTCCAACACCGCTGGCTGTTGGG 25790 37 94.6 35 ............CA....................... CCTCTTCCAGGGCTGCTTGCTTAACCGCGGCTAAT 25718 37 94.6 35 ............CA....................... TTTACGCAGGAAAACCTGCCAGTGTCAAACGCATA 25646 37 94.6 34 ............CA....................... AGCCTTCCTTCCACTACCACCCTGTCCCCCAGGA 25575 37 94.6 36 ............CA....................... GTTAGTCCACTGGCGTCCAGGAGTGTTGCCTCTTTC 25502 37 94.6 34 ............CA....................... CATCCTGAAAAGCGCGCTCCTTAACTTTTTGTGC 25431 37 94.6 31 ............CA....................... TCTCTACTTCAGCTACAACCGCACCTGTAGA 25363 37 94.6 35 ............CA....................... TCCCCTGGACAAGAGCATCTCTTACCTGCCGAAAT 25291 37 94.6 34 ............CA....................... CCGCAGGTTCTACATATTCACCTCAATCTCACTG 25220 37 94.6 36 ............CA....................... CTGCAAAGTCTAGGAGCATTGAAGACGGCTATTCAC 25147 37 94.6 34 ............CA....................... AGGGTTTTTTGTGGAGTGGAGGGATTCGTCGAAC 25076 37 94.6 35 ............CA....................... TTGTCGTACATACAAACTACCTGGTTGACGATAGA 25004 37 94.6 34 ............CA....................... GTTCAAACAAACAAACAACAGTGAGGCTGTATGG 24933 37 94.6 40 ............CA....................... TTCGTTCGATGGGTATTCGCCATTGTATCCGGAGACTTTT 24856 37 94.6 36 ............CA....................... ATCTAAATTCCTTCAACGATTAATCCGGACATTTGG 24783 37 94.6 34 ............CA....................... GAGATTCCACCCCTCCTGGCTTACTGGCAGGTAA 24712 37 94.6 36 ............CA....................... GTAAGCTTCTTTCCTTTGCAGGGATTCGGCCTCAAA 24639 37 94.6 34 ............CA....................... TTAAATAGTGTTTACAGAAAGCTGAACTCACTTG 24568 37 94.6 35 ............CA....................... TTTGGGCAAATGGCACAGAGCGTTTGCTCTGCGAT 24496 37 94.6 34 ............CA....................... TTTTTATAGGTCGACACAGCTGTTGGAGCTACAA 24425 37 94.6 40 ............CA....................... ATTATAAAAGAGTAAGGGAAATAAAGCCCGAACACAAACA 24348 37 94.6 34 ............CA....................... CATGTTCGCCTGACGTGTTCAATCTGCATCGGAT 24277 37 94.6 38 ............CA....................... CGCAGACTTCTTCGGCTAATTGGCGCAGTGTTGGGAGG 24202 37 94.6 35 ............CA....................... CTTCCACAAATATCCACTAAAGCCGCATCACAAAT 24130 37 94.6 35 ............CA....................... CAAGCGGAATTAAAGGAGCGTACCATTCCTGGCAT 24058 37 100.0 39 ..................................... TTCATGCTCGGCAACTGACCGGGGAAGATTGCGTAAATC 23982 37 100.0 37 ..................................... GTTTCGCCGCACAGGGCGTCCGATGATAACGGCTCTG 23908 37 100.0 36 ..................................... GTCATAGTCCATTTCCAGTCCTTTTTCTGTTGCACG 23835 37 100.0 34 ..................................... TGACGTCGAAAGATTCTTTCTCTATTGCTGGAGG 23764 37 100.0 37 ..................................... CATAAATAAAAACACCTGTGCGTGTTGCATAAGCATC 23690 37 100.0 39 ..................................... GCAACCCGATAGCAACGCCTTACATAGGATTGTAACCTA 23614 37 100.0 36 ..................................... GCCTATCTTGGTAGCAACCTGAAAAAAAAGCTCATT 23541 37 100.0 39 ..................................... TTGGAGGACACGAGAACCGCAACAGAAGCTGGGAATCAA 23465 37 100.0 38 ..................................... TGAAAGCATACTGGAGATGTCCAGGGGCGAGGAGCAGG 23390 37 100.0 38 ..................................... GGTTGCTCTCCAAAGCACTGACCCAGGAAGGGTTTCGA 23315 37 100.0 37 ..................................... GGGAATAACGAGCGCCAAATATATAAGGGCGAAAAAT 23241 37 100.0 34 ..................................... TTGCTTAATCCTTTATGTAGGTACACCCATTTGC 23170 37 100.0 35 ..................................... ATCAATCACGGCTACCTAAACACCGGCGGAAATCC 23098 37 100.0 39 ..................................... GCGAAGCTAGCTGCCCCAGGAGGAAGGCAGCGAGGTTGC 23022 37 100.0 34 ..................................... ATTTGTGACAGACAGCGCATCTCTATTCCCAATT 22951 37 100.0 36 ..................................... CCCTTGAACAAGGTTGCTACCGACGAGTTAACGAGT 22878 37 100.0 39 ..................................... TTGCCGTCAACACCACGGCGTTTGACGCTCCCACGTTGG 22802 37 100.0 34 ..................................... AAAGTCGGGAGACGCAAGAAATTTGTCCCCAGCA 22731 37 100.0 34 ..................................... TTATTCGCAGATTCTGTTGCGACTCTCGTATCTT 22660 37 100.0 35 ..................................... AATAGATAAGCCTAACCTATCGCTATGCTGTCTGT 22588 37 100.0 36 ..................................... TACACATATGGAAACCTCCAGGGGTGGGGAGGCTTC 22515 37 100.0 34 ..................................... TCAATGGGTGGCGCAGTGGCAGGGGCGGCTCCGA 22444 37 100.0 35 ..................................... TTTCCAGTCGCTTCGCGTTCTGATGGGACGTTTTG 22372 37 100.0 36 ..................................... CAGAGATTGTCACCATTGTCACTATTGTCACCGTCT 22299 37 100.0 35 ..................................... CTAACTCGTTCATCTGACTAACGTAGCCGCGGAGG 22227 37 100.0 36 ..................................... TACACATATGGAAACCTCCAGGGGTGGGGAGGCTTC 22154 37 100.0 34 ..................................... TCAATGGGTGGCGCAGTGGCAGGGGCGGCTCCGA 22083 37 100.0 35 ..................................... TTTCCAGTCGCTTCGCGTTCTGATGGGACGTTTTG 22011 37 100.0 36 ..................................... CAGAGATTGTCACCATTGTCACTATTGTCACCGTCT 21938 37 100.0 35 ..................................... CTAACTCGTTCATCTGACTAACGTAGCCGCGGAGG 21866 37 100.0 35 ..................................... ACTATTGTCACCTGATTTTGCGTTCTCGCCAGCCG 21794 37 100.0 33 ..................................... AGTGCAAGGAAGAGTGGAAAAATAAGCGTAGGG 21724 37 100.0 38 ..................................... TTTCGTAGGAAGGGTACTCCTCTTCCCACCCGGATCTG 21649 37 100.0 33 ..................................... GAGTTGTCAAACGGGGCGGTGGTTGTCCCAGTA 21579 37 100.0 37 ..................................... CTTCCCTTCCCTGCCGGGTTTCTGCGTTTGGCCTTCG 21505 37 100.0 37 ..................................... GCTAAAATGGCACCTCGAAAAAACCCAAACCCACGCA 21431 37 100.0 37 ..................................... CCAACTCAAATTGCACCTTGGAATCCAGCTAGAAAAT 21357 37 100.0 33 ..................................... TCCTCAATCTGGTCGACGAACTAGCTGGAAAAT 21287 37 100.0 38 ..................................... TACTGAGGGCACTCAGGTTGTCGCCTACACCTGCGAGG 21212 37 100.0 35 ..................................... GCCGCTGTGTGTAGAGATGGACGAAAATTCGGTTT 21140 37 100.0 35 ..................................... AAATGTATTCACCAACCTGGTATTTGCTCTCGTTT 21068 37 100.0 32 ..................................... TAATACCCGCTGAACGGGAGGAAGAGACTTGG 20999 37 100.0 40 ..................................... CACGCACAGGAGAATCGGAGATACGTAGCGGAGCAGTTGT 20922 37 100.0 33 ..................................... TCCTCAATCTGGTCGACGAACTAGCTGGAAAAT 20852 37 100.0 38 ..................................... TACTGAGGGCACTCAGGTTGTCGCCTACACCTGCGAGG 20777 37 100.0 35 ..................................... GCCGCTGTGTGTAGAGATGGACGAAAATTCGGTTT 20705 37 100.0 35 ..................................... AAATGTATTCACCAACCTGGTATTTGCTCTCGTTT 20633 37 100.0 32 ..................................... TAATACCCGCTGAACGGGAGGAAGAGACTTGG 20564 37 100.0 35 ..................................... CACGTCGGAGAATCCTCCCTGTGCCGCCAGCTGCG 20492 37 100.0 33 ..................................... ACGTTTTTCAGGGTGCATACACCCTGAAACTTA 20422 37 100.0 34 ..................................... TTTATGCGACTAAGGATTTATCTGGGACAGAGGC 20351 37 100.0 34 ..................................... GCGGATAGGCATTCCCCCTCAGTAACGTCAACTC 20280 37 100.0 35 ..................................... AAATATTGACAGCAGCATGAGTGAATGGGATAAGT 20208 37 100.0 35 ..................................... TTCGATGAAGTTGCGTCCGACGCTTGCGCTACAGG 20136 37 100.0 34 ..................................... TTTTGTACACAACCCGAAAATTGCTGGAGGCACG 20065 37 100.0 35 ..................................... AACCGTTGACGTTCTATTGCTGAATGAGAGAGACC 19993 37 100.0 37 ..................................... ACTGGGGTTTGCCGCGTTCATTTACGAGGGCGGCGGC 19919 37 100.0 39 ..................................... CTGCCGCTTTCCACCCGGCTTCTTCCCAAGCTGCCCTAA 19843 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 87 37 98.3 36 GTTGCAACTAATTCAAATCCCTATTAGGGATTGAAAC # Left flank : TGTTTGAGTGCGAACAGAAGCCAACTCAGTATGCTAAATTAAAGGCACGCCTGAGCAAACTGATTAAACCCGATGAAGACAGCATCCATTTCTATTTTATCTGCGCCTGCTGTCAAGGTAAGGTCTACACCGCCACCTTCCAACACCACCCCGGATATGCGTTTCTATTTCTCTGCGCCTGCTGTCAAGGTAAGGTTGAGCGCATCGGCGGCGAGCAACTTCTGGATACGACGGTGTTTTTTGCCTAAAAGCCGAGGATCGGTAGGTGTAGGAAACGGGGAATTAAATTTTTTGTCTGAAACTCCCACCCGGCAAAGCTTTGACTTCCCTCGCTGCCAAAAACGAGCCTCGGAATTCTCCAAATGCTTGACTGGCTTGGGTTTTAGCGATACTATTATTAGGTGAGCTTCGCCAGCCAAACCCTGAAATGGTACTTCAACTAGCGATCCTCGGAACTGAACCTCGAAAGCTAAATACAGTAAGCTTTTCAGCGCTAAACA # Right flank : GCAACTTATCAAAATCCCAACGCAAGCAGAAAACAATTATCAACCTGCTGTTTCCCGCAGCCATTTTAAAATTGCTCTACCAACCGCCTGTCCGCCGCGCCTACTCCAATCTCTGGCGTTAGGCACGCGGACGCTGATAAAATACAGCAGCGCCAGGACAGAAACGCGGACGTTGGTATCTTCTGCGCCGCTTAAGATTTCCAAAGACTGACGCGGATCTCGACCTCCCGCAATGCGATCGCGTATACTCAATTCTTTAGCAATCTCTGCACTCATAATCGCCGATAACCGCAAGTCCGCCGGATCGGTTTTCGTGCGATGCACCAAGACTTCTGCCCCTTGGGCGCTGCTGGTGGCGCTGTTGTGGTGGATCGAACAGAACACATCGTGACCCGCCGCCAGCTTACCTATGTTATAAAGACTGCCTGCCGCATCCGTAATTACACAGGGAACACCCGCCGCATCAATTGTTGCCTTGGCAGCGCGAGCCGCAATGAAGT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTAATTCAAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTGCAACTAATCAAAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 1923-1307 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000241.1 Microseira wollei NIES-4236 sequence241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1922 36 100.0 39 .................................... CATTAAGTTGCTCGGCTTGACGGCGACACTGGCCCGGAA 1847 36 100.0 40 .................................... CATTTGCTTGTAGGTGATAAGTCCGTAAAACGTGATTCGG 1771 36 100.0 35 .................................... ACCTGCCCATTCCTCAATTTTTTTCTTCAAAAAAT 1700 36 100.0 35 .................................... ACTTGGGCGATAGCAGCCGGGCGAGCATCTTTTAA 1629 36 100.0 40 .................................... TCAGACTTGATACCTGATACATCGACACCGAAGAAAAATT 1553 36 100.0 32 .................................... ACCTCATCCCGAGGGTTTACCTCCTCGAAACG 1485 36 100.0 39 .................................... GATGTGGGTGATTTGATCGTCTTGACTTTGGTTGTTTTG 1410 36 100.0 32 .................................... ACACACGAGGGTGTGTAGCCGAAAAAATTACT 1342 36 91.7 0 .............................CTA.... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.1 37 CTTTACAACTACATCTCCCCGCAAGGGGATGGAAAC # Left flank : TTATGTAAAGGTGACCTTAGTCACAAGAATTAAGCGATCGCGATCGCAGATAAAGAAGAACCTCTTCTCAGATCTTGCACCATAGTCCACAACCGCCAGAGAATCAATTCTCTGGCTAATAGCGAAAGTCCATTGAAATGGACTGTTAATCTGATTTCAGTCCACTTCAGTGGACTTGGGCTAAAAGCCTTTGGACTTGAGTCCACGGCGGGCGAAAATCACAGGTGCAAGATGCGATCCTTCCCAATCTCCCTCCTCCGGGGCTTGACAAATTTTTCCTGTTTACCTTAATTTATTTTGTATAGCGTCATCGACGCATCTCCGCCGATCCTTGAAAACCGCATAACTTCGTTGAGATGCGTCGATTGCTTACGCAGTCAGGGTTTCAAGCTTTTATTTTTCCGTTTATTGCAAATGACCCCCCCTTTATTGACAGTAAAATTTAGATGCGTCGATTTGCAGCCTGAAACCCAGTCCTGGTAAGGCTCCCTGAACGAACT # Right flank : TCCTTATTCCGCTCAATAATCGAACAGATTCTTAGGAACAACTAATTGAGAAAAAGTTGAATATTTATAGGAAGTGGCGTTAGCTGGATTACACTACAACGCTAGTGCTGTTACAGGTTTGACCAAAATGACCTATCTCGAAACCGCTGCGGAATTTTACAGCAAAGTGGCGCAAAAGCCCGAAGTGGGGTTGTGCTGCGTGCAAAGCAGTCCTTTGCAACTACCGGGATTGAAAATTCCGCCGCAAATGCAGGAAATGAACTACGGTTGCGGTACAACCGTCCATCCTGCGGAATTGGGAAATGAACCAACTGTGCTGTATGTGGGAGTTGGCGGGGGTTTGGAAGCGTTGCAGTTTGCTTACTTTTCCCGGCGTCAGGGTGGGGTAATTGCAGTAGATCCGGTGGCGGAAATGCGTCAGGCGGCGTCGCGGAATTTGGCGCAAGCAGCTAAGGAAAATCCCTGGTTTGATACTGCTTTTGTGGACATTAGGGAAGGGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAACTACATCTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 53157-52523 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000031.1 Microseira wollei NIES-4236 sequence031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 53156 36 97.2 40 ...........T........................ AAATTATAATATATGGACCGGCTTGAACAGCATATTTGTG 53080 36 100.0 36 .................................... CTGAAGACTTCAATCTTGTCTACTACTTCATCACCA 53008 36 100.0 39 .................................... TAATTGTAAAATTTTTGCCTTTCCTCTGGCGTTGTCAAG 52933 36 97.2 37 ...........A........................ AGCATACTGGGAAAGCCAAACCAAATTAACAAAAATG 52860 36 100.0 40 .................................... TCTTGGAGTTGTCTTAAACAACCCGTACTCTTAATAAACA 52784 36 97.2 39 .........G.......................... TCGACGCGCTCGGTCGTTTCGGACTTGACGTCCTTACGA 52709 36 100.0 39 .................................... ATAATGTATTCCTTAAATTCATCAGCAGTTGCTGGGGAA 52634 36 100.0 40 .................................... AGGCTGAACTTGGAATTTAACTGATACTTGGCGTATGCAG 52558 36 72.2 0 C.TT..A....T.CA..............C.A...A | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 96.0 39 GTCGCACTTACCTACTCCCCGCAAGGGGATTGAAAC # Left flank : TACACCAACCAATCACAACCAAATCGATTTTTGGTTGTAGGGGCACGGCATCCGATCATCTGTGGCAAAAATCAACCGTTATTCCATCTTCCCTACACAACCGATGAAAACTGGTGATGATGTTGTTTGCGGCGCGGGTGCGATCGCACTCCCTAATTCATTCTCGAACGGCACTCAAGCGCCTACTACGAACGAGGGCGATCGCACTAATCCACCCCTGTCCCCAGCAAAACTGCTTGACAATTGGGGATTGATGGGAAATAATTAATCTAACTTTCAGAACCATGACAATTTAATATTTTGCCGCCAATTATAAAAATTTCCGGCGATCGCGCAAAATGGCTGAAAAGCCCATTCTTTCGTCGAGGCGGTCGGTTCTTTGCCCTGTAAGGGTTTCAGATTTTATTCCAACAGATTTTTTAGAGTTTGTAGCCACAAAATTGTAGGCTGTCGGAAATGGCCTCTGGAAGCCATACAAGGTAAGGGCTTCAAAGCGAGGG # Right flank : GAAAAACAATAGCTGCACCTCACCACAGCACAATCAAACCTTAACCCGCCAGTCGTAGCATGTAAAATAGCCTTTGCTTACAGGTTCACTCCCAATGTCAACATCCCGGCAACTCCAGCGAGAATTGGGTGTATTAGGCGCAACGATGATGGGACTCGGTTCGATTATCGGTACGGGAGTATTTGTCAGTATCGGTATCGCGGCGGGTATTGCCGGTTCTGGGGTAATTCTAGCGGTGGCAATTGGTGCTATTGTGGCAATCTGTAACGGCCTCAATAGCGCTCAACTTGCTGCTAGTCATCCCGTCAGCGGCGGTACTTACGAATATGGTTACCGATATCTGACGCCTTGGTTGGGTTTTACCGCCGGGTGGATGTTTATGTTGGCTAAAACTGCTTCTGCTGCGACGGCGGCGTTGGGTTTTGCGGGTTATCTGCAAAGGTTTTTTGGACTATTTGGACAGGGATTGCTGGTTGCGATCGCTCTTTTATCCGTCCTCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTACCTACTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 11642-8693 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000085.1 Microseira wollei NIES-4236 sequence085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 11641 37 100.0 34 ..................................... ACCATCACCCTCACCAACATCTTGCAAATTACCA 11570 37 100.0 34 ..................................... CATAACTTATCACCCACCTGTAACCCATACACAG 11499 37 100.0 40 ..................................... ATGGATGGAGAGTGCTGGGAGTGTACCACTTGCACTATCA 11422 37 100.0 36 ..................................... TTCCAGTGTTTGGCGTGCAGCGGCTATCCGCTTCTC 11349 37 100.0 37 ..................................... TGTCACTGTCACCAGTACTGTCACTAAGTACTGGTGA 11275 37 100.0 36 ..................................... CGGAAATTAGGCATCGATCGTTGCTTGCTTGCTTGT 11202 37 100.0 37 ..................................... CTTGCAGAATATGGAAAGGCTCCGCAAATCCATATAC 11128 37 100.0 34 ..................................... TGCGATAACCTCTGCCATTCCATAGGGGTCTAGC 11057 37 100.0 34 ..................................... ACCTAAACAAAGAGGAGACAAGTGAATGGCAAAT 10986 37 100.0 35 ..................................... CGGCAACTTGATGAGGAAGCCCAAGCTGTATCCTT 10914 37 100.0 35 ..................................... AGCGGCAACAGATTGAGCAACCCCTGATGGATACG 10842 37 100.0 36 ..................................... ACAAAAATCGACAAAAGATGCTCCAACCCTTGAAGA 10769 37 100.0 38 ..................................... ATCTTACCCAACTGCCAGTCAGGCATAAAAGGCGCTTT 10694 37 100.0 34 ..................................... TCCATCCTGGCCTGCATCCAAGCTAAGCGCTCAT 10623 37 100.0 35 ..................................... TCTAGTTCGTCGGCTACTGCCCCAAAAGGAACAGT 10551 37 100.0 35 ..................................... TTTTGTTGCATTCATTGGTGCTAAATCCCTTCAAC 10479 37 100.0 36 ..................................... TTCAAAGCAATGTGCTTTCGGAACCTACCGATGAAC 10406 37 100.0 35 ..................................... CCAAAATTGTCAACTATTGCGGGCACTTCCCGCTT 10334 37 100.0 37 ..................................... GCTCAATCCGTTGCTGCTAACTTAACTGCCTGCACCC 10260 37 100.0 35 ..................................... GTTTCCCTTTTCTGGATGATGCATGGCTCACATTG 10188 37 100.0 37 ..................................... GCCTTTTATTGTACTTTTGTACACATGCTGACCGGCT 10114 37 100.0 34 ..................................... CATGACCACGTCCCGGCTCCTTCGGCAACTCGAC 10043 37 100.0 35 ..................................... TAATTGCGGAGTAGGTGCGACAGGTGGCCTTGACG 9971 37 100.0 35 ..................................... CCGGAACAATGACTAGGTCAGCGTCTTCACCTAAT 9899 37 100.0 36 ..................................... CGACAATTTACCGATAACCCATTCTACGGAATACTC 9826 37 100.0 35 ..................................... GGCTGATTTTGAAGTAACTCCGAATCTTTTTTCAG 9754 37 100.0 37 ..................................... GAAGTTTTGCGGCATTAAGCGCTTCCTCCTTTGCTAA 9680 37 100.0 37 ..................................... GGCAGCCAATTTGTTTGCGGACGCTGTGATTCCACTT 9606 37 100.0 37 ..................................... CCTGCGCGGTGTACCCCTCCATGGGGACATAGTCCAC 9532 37 100.0 33 ..................................... CCATACCAGTTGCTACCGCTTGCCCAGAAGCAG 9462 37 100.0 47 ..................................... TAACTTTGCTTCGTAAGCGATTCGGGTCGCGGCAAGCGACTTCTCTT 9378 37 100.0 35 ..................................... GATAAACATACAAAAAGCGCGACCAATTCCCGTTG 9306 37 100.0 35 ..................................... CTATGTTTTCTAAGGCACCCTTGCCTATAGAAATC 9234 37 100.0 35 ..................................... GTCTGTCTTTCCCGCGGATCCGCGGGAAATATAAC 9162 37 100.0 35 ..................................... GCGCTAGAAGCTTCTATTGAAAATAGAAAGCGCTT 9090 37 100.0 35 ..................................... GCCAAAACTGTCTACTTCCAGTGTTTCATATCCGG 9018 37 100.0 37 ..................................... AGCAACAGAAGCTCCAGTTACGAATGGAATTAGAAGC 8944 37 100.0 36 ..................................... AGTCCTTCAAGGAATCAACAACGGAGTGCTTCCCGT 8871 37 100.0 34 ..................................... GATGATGAGGTATCCATTTTGCTGCAATATTTGC 8800 37 100.0 34 ..................................... GCCGGAGACGACGAAGAGACGATTGATGAGCCGC 8729 37 94.6 0 ..................................T.T | ========== ====== ====== ====== ===================================== =============================================== ================== 41 37 99.9 36 GTTGCAACATACTTAAATCCCTATTAGGGATTGAAAC # Left flank : CATTTTAGGTGCGAAGGGAATTTGGGTAGAGACAGATATCGTCAAAGAAAAGGGAATTCCTGGGAATCGCGAAAAATCTTTCGTCACTGCGTTTGATGTCACTCGCAGTTTGTTATGGGCGGTTATCGGTCAATTTTACTCGCCCCACTGTACCGAGGTAAGGCCGCTGTCTGAAGTAAATTTGGTAGAGTGGAAGGCGAAAGGGTTTAAGTGCGAGCGCCAAGGTAATCTTGGGTATTGAAGCAAAAATTCCGGGAGAGGGTAGGTGTTGGAAAACCAGGGTAAAATTTTTCGGCTGGAACCCTTACCCCATAAGCCTTTGATGCCTATGGGAACAAAAATAGCCGCTCGGAAACGCTCAAACCCTTACTGGGATTGGATTTTAGCCTGGGTGAAAATCTATGGAGTTGACAGAGCGATCGCTGAAATGGTACTTTTATGATTGTCTCCCGGTAACGAACCTTGAAAACTACATACAGAGAGTGTTTCAGGAACAAGCG # Right flank : CATGTCCGTTTAATTGCCCATAATAAAAAAACCTCACCCCGTAGTTGCGTAGGGACACGGCATCAGAGATATCTCGGACAAACAGATAACTTTAATCGTGCCGTGTCCCGGCTCACGATCGTAGGTAATCGATCGGACATGATATGAAACAAAGCATTTAATAAGGGGATGGATAGCTGGAACTAAGGGAAGGGTTAAAATGCCCACCAATGAAGAAAGATACCGAACATGGGTTAACCACGTAAGAAGCCGGATCGCTGAGGAACCAAGACAAAAGGCTTGGATTATAGAAAAAGAGTGCTGGAAGTTGATCGACTTAGCGATAGACCCTATAGGTGGTGACGAGAAAGTCAAGAGGATGCTAACCGTTATCTTGGATGATAGCGACATGGAGCTACTAGAGGAACTAATCGCTTTTGATGAGGGCGATATCCCAAAAGAAAGCCTGTTAGTTGAAAAGATCAAGAAGCGGTTAATATCGGCTCTCCAGGCGTAAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACATACTTAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 21092-21650 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLAY01000087.1 Microseira wollei NIES-4236 sequence087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 21092 37 97.3 36 .........A........................... TCGTGAGCGATCGCTTTAAGCGTCTGTGTTTTCCCA 21165 37 97.3 37 ...........................T......... GTGCGTTTGGCGTGTCCCCGTGCGCAGGTGTTCTAGG 21239 37 94.6 37 A......................C............. AAGCTGGTAACTGCGAGACTGTACTGGGAGAATTATT 21313 37 97.3 39 ..................A.................. ATTCTGAAATCCTCCTTTGTAGAAATAGTAAGTTTCCGA 21389 37 100.0 37 ..................................... ACTGTAAGCGCCCTTACAGATCTAAAGGTGCGCGAGG 21463 37 97.3 39 .......................C............. AACCAGACGAGGGAGTTCAGCGGTAAAGTAATCAGTTTC 21539 37 94.6 38 .........A.............C............. AAATCCTGTAGCTGGCAGTCAACCTGGTCAAAAAATTG 21614 37 89.2 0 .........T.T.C.........C............. | ========== ====== ====== ====== ===================================== ======================================= ================== 8 37 96.0 38 GTTGCAACTGACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CGGGTGATTTTGGTTTGAGCGATCGCATTGTCTATTACCCGGCGAATTGTGGGCGACGAAACTAACACTTTTGTTAAATTTGAGCTTGTGGCTGGAGTTGGATTGGCAGGATTGGTAAGCTGATACGCGGCAGGATTTTGACAGGCAGCGCAGAGGGAAGTAACGATCAAAATGACAGGCGTGAAGCGAGCGGTTTTTAAGTCCACGAAGATATCCTCACTTGCTTATCAATAAGTTAACATTTACTCCCTTCCCGCTAGAAGATTATCTATTTCTTTCTTCTTCCTTCTTCCTTCGTGTCCTTCGCGTCTTCGTGGTTCATTCAATAGAAATTCATCCGACAAGAAGGGAGTAAACAAATCCCTACTCGGATTTTCTTTACCCCGTAAGGCTTTCAGCTATTTTGGCTTGTGCAAATTCCAGTTTGGCGCTATACTTAACCTAGATTCACGCAAATGCACCTTGAAAACTAAATATATCGGGCGTTTCAGGATGCAGCT # Right flank : CCCCTTAGTCATTAGTAAGTTGGGTTTCGTTACCTCAACCCAACCTACTGTTATCTAAGAACTAATTTGACGCAGTTTCAATGCATGGAAAATACTTAAAACATCGTGGGTCCATTTGGGCATAATTAGCGTCATGGCGATTTCTTCTATTGTGTGGATAATGCCTGCAATTATTGCCAGCCACAGGGTTAATCCAGCATAATTAAATCCAAATAAACCAATCGTGGCGATAAACAGCGTGATGCCCCAAAATTTGGCTGAATAGGTGTGATAGGAAGCGGGTTTTCCATATTTGGCTAAATTAACTATCCACCAAATTAATTGGGCGAATGCGATTAAACTTAATGGGGTTGAGAAGGCGATAATTTTATCTGGATGCACCAACCACGCACTGATGCAAATACATAAATAAAGAATCACATCTGCCCAGCTATCAGATTGCCGCAATTTCGCATTGCTGACGCCAATTCGACGGGCAATGACGCCATCGAAGATATCTG # Questionable array : NO Score: 6.85 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTGACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //