Array 1 34572-36309 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOH01000011.1 Salmonella enterica subsp. enterica serovar Essen strain CFSAN059899 CFSAN059899_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 34572 29 100.0 32 ............................. AATTCGGACTGATTGATCCAGTTGAGGTTGTT 34633 29 100.0 32 ............................. GCTAAACAAATTATCACTATTACTATTTCGGA 34694 29 100.0 32 ............................. AAAGGGGAAAACAGCGTGAGCGAACAAATCGA 34755 29 100.0 32 ............................. TTAACAACTGCCGCGCAGATGATCGGGAAATT 34816 29 100.0 32 ............................. TTAGACCGCCTAAGTCCCGTTGCCAGCGCAAA 34877 29 100.0 32 ............................. TCTCGACGGTCGGCACGATATAATGAATGATT 34938 29 100.0 32 ............................. CGGAAAAAGACGCATTGCGCGACCAGCTTTGC 34999 29 100.0 32 ............................. GAATTATTCCGGCAATTGGCAATCCATTATGG 35060 29 100.0 32 ............................. CGATAACCCATTAATCAGGAGTAAGTGAAATG 35121 29 100.0 32 ............................. GGATTAGTGTATGCTGTTCGTATCAGCTTGTC 35182 29 100.0 32 ............................. GCTATTGACAATGCAATGATTAAACTTATCGA 35243 29 100.0 32 ............................. TTCCTTTAATCCAGGTTCCGCCTGGTCGGTGA 35304 29 100.0 32 ............................. ACGGGTAAATAAATCTTCAAATGCTTTTCTAA 35365 29 100.0 32 ............................. ATAATTTAGAAGATTCTGATTTGCGCAGATAT 35426 29 100.0 32 ............................. AGATCGATTTGAACCGCAGAGCTGAAAATAAC 35487 29 96.6 33 ...............A............. CCGTAGATCGCATCACCGGCGCTACGCATTAGG 35549 29 100.0 32 ............................. GATCGAACAAAAAACCTGTGGTCATTGAAACC 35610 29 100.0 32 ............................. ACTGTTATAGTGCATTTTCCCGTCTCGCAGCT 35671 29 100.0 32 ............................. TAACCGAGGAGGCGCGTCGATTGTTCGGGCAT 35732 29 100.0 32 ............................. TTCGCAGCGAGCACGCCGAGTGGTCTGATGCC 35793 29 100.0 33 ............................. CCTGGCTAATTGATAAAATTATTATTTTCGGGC 35855 29 100.0 32 ............................. GCTATTACGGCGACACCGCGCTTGTTGTCTAT 35916 29 100.0 32 ............................. TGCAAACGTCGACGTCTACCGGATTGTCAGGC 35977 29 100.0 32 ............................. TATGTTTTGTTTAATTCTAAAACGGGACAAAT 36038 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 36099 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 36160 29 93.1 32 A...........T................ GCCCATACATTAAAAATCGTGGACGCCAACGG 36221 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 36282 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGTCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 52853-55750 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPOH01000011.1 Salmonella enterica subsp. enterica serovar Essen strain CFSAN059899 CFSAN059899_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 52853 29 100.0 32 ............................. TGGACGCCGTCTATTCATATGCCGCGCTGGGC 52914 29 100.0 32 ............................. AGTCTTGGGCAGCTAATCCGTGGGTGTGGGTG 52975 29 100.0 32 ............................. GGTCAGATCGCAGCGGCAAAACTTGCAGGGCG 53036 29 100.0 32 ............................. AGCCTGATGATCAGATATCTGGAGAAATACCC 53097 29 100.0 32 ............................. GGATAGGTGAGGGGGTTGTCTTCACTGCATCA 53158 29 100.0 32 ............................. ACAGGCAGATCATTTATTAATCAGAATTAACA 53219 29 100.0 32 ............................. AGCAATTAGCGCAGCTGGCATCAAGGTTAAGG 53280 29 100.0 32 ............................. GCATCGACCATATGCACGGAGTTAAACGCCGC 53341 29 100.0 32 ............................. GACAGGGAAGGGTCGCTGGAGCTGCAGGGATA 53402 29 100.0 33 ............................. GGATTTTGGTCGGCACGAGAGGATTTGAACCTC 53464 29 100.0 32 ............................. GCCATTGGTAATAGTATGGCGGTTCCTGTTAT 53525 29 100.0 32 ............................. TCATTGGTGTAGCTGGTGCGGCGATCGGTGGC 53586 29 100.0 32 ............................. CAGGAATTTTGTGTCATCCTTATGCATGAGCG 53647 29 100.0 32 ............................. CATTACCAGCTGTATCAAATTGCGTAGAAATA 53708 29 100.0 32 ............................. CCAGACAGCGCGGGCTAATGTCTGCTCTGAAT 53769 29 100.0 32 ............................. GATGACTAACTTCCCTGAGTTATCGGAAGTCT 53830 29 100.0 32 ............................. CCGCCGCGCTTGCTAACAGCCTTTACCAGCGG 53891 29 100.0 32 ............................. TGGCGCTGGGTGTTCAGTCCAGCACCTGTATT 53952 29 100.0 32 ............................. GTTGCGTGACATCTTTTTTTGTACCTTTTTGG 54013 29 100.0 32 ............................. TTGAACATTAGCGGCTGACCAAACGTTTCAGA 54074 29 100.0 32 ............................. CGGCTTGTAGGTGGTGATAGCCATGCTTAGCC 54135 29 96.6 32 A............................ AGTTAACAGATTATCCTTACGTCATTATTGAT 54196 29 100.0 32 ............................. ATTACGAGTATTCGGACGTCGTAGACTCCTAT 54257 29 100.0 32 ............................. CGTGGCTGGAGCAACGAACAGATTAAAGGTGC 54318 29 100.0 32 ............................. AACTTTTTTCATCATTCTTAGCTGGTCGTCAC 54379 29 100.0 32 ............................. GTATTTACCACGCTGGCATCGGGTAAAAAGAT 54440 29 100.0 32 ............................. CGCCATCACGTTAGTAGCTGCGCCCCCCAAGA 54501 29 100.0 32 ............................. AGAACCTCGTTATTCAGCGACAGTATTTTTAT 54562 29 100.0 32 ............................. GATGTTGTACTGATCATCTTCCAGCCCGGCAA 54623 29 100.0 32 ............................. CGCCTGATTGAATACGCGGGAATTGCAACCCG 54684 29 100.0 32 ............................. CGCTTCCGCTCCCTCCCAATAACCCCATATTT 54745 29 100.0 32 ............................. ATCAAAAATACGAGGTTTGGCACGACACGGGA 54806 29 100.0 32 ............................. CAAAACTGGAAATGTTCACGTCGTACCCCTGT 54867 29 100.0 32 ............................. AACATGATCCGCAACCCGTCGCTGTCAAAAGC 54928 29 100.0 32 ............................. TGGACGCCGTCTATTCATATGCCGCGCTGGGC 54989 29 100.0 32 ............................. CCCCGTTCTGTTACCCGCGCCCGCTGGGCTGT 55050 29 100.0 32 ............................. GGACGGATATTATCCAGCATTTCAGGGAGTAC 55111 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 55172 29 100.0 32 ............................. AGTTTTCGTTTACACACACGTCGCCGGCCACG 55233 29 100.0 32 ............................. GCCGCGGATCTCGGGGAGTCTTTGCCGGATTT 55294 29 96.6 32 ............................C AACAACGACAATTCAGACAGTTCTAACTTTTC 55355 29 100.0 32 ............................. CGATCTCCTGACGCTCCGCGACCAGTTCAAGC 55416 29 100.0 32 ............................. CTGCTCGAAATTGTCGCCTATTGGGAAATTAT 55477 29 100.0 32 ............................. AATGCACTCTAGCTTTTTAACAATTTCCCAGA 55538 29 100.0 32 ............................. GTACGTGACGCCTCATGAACTTCGCCCTGATC 55599 29 100.0 32 ............................. CCAGTTGCATGGCGTCCAGCCAGGCTACACCC 55660 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 55721 29 96.6 0 ............T................ | A [55748] ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //