Array 1 948408-950449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZW010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA20 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948408 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 948469 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 948530 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 948591 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 948652 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 948713 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 948774 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 948835 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 948896 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 948957 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 949018 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 949079 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 949140 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 949201 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 949262 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 949323 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 949384 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 949445 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 949506 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 949567 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 949628 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 949689 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 949750 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 949811 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 949872 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 949934 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949995 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 950056 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 950117 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 950178 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 950239 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 950300 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 950361 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 950422 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 966582-967569 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZW010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA20 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 966582 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966643 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966704 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966765 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966826 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966887 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966948 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 967009 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 967071 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967174 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967235 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967296 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967357 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967418 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967479 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967540 29 96.6 0 A............................ | A [967566] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.4 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //