Array 1 1-149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGO010000045.1 Pectobacterium versatile strain A546-S4-A17 A546_(paired)_trimmed_(paired)_contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1 28 100.0 33 ............................ AGTGCTCGGCGAGGTCATCTACGTATGAATCAT 62 28 100.0 32 ............................ TTCCTGCCTCAGCGCGTCCACCTTCTCGCGGA 122 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 33 GTTCACTGCCGTATAGACAGCTTAGAAA # Left flank : | # Right flank : ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATAGGCAGCTTAGAAAAGGATTGGCGCTCACTATTCATGCCATTATCCGTTCACTGCCGTACAGGCAGCTTAGAAACCTAAATCGGGATAGCGCATTGAGTACGCCGTGTTCACTGTCGTACAGGCAGCTTAGAAATTTGTTCGTTCAGCGTCTAATGCCGCTATTTGGTTCACTGCCGCACAGGCAGTTTATCCACGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGACAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.20,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 236001-235434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGO010000009.1 Pectobacterium versatile strain A546-S4-A17 A546_(paired)_trimmed_(paired)_contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 236000 28 100.0 32 ............................ TGAACGGCACTGGCATCACCAGTCTGCCTGAG 235940 28 100.0 32 ............................ TTCTCCTCCGGTGGCGTTAATCCTTCATCGTC 235880 28 100.0 32 ............................ AGATAATGCGTGCGGTATGGTCGCAGCCGTCA 235820 28 89.3 32 ...........CA........C...... CACACACCTGCATGTGTCAGCACATCAAGTGG 235760 28 92.9 32 ...........CA............... GTTTAATGGGTTTGTGAATTGCGTTCCTGCAC 235700 28 85.7 32 .......A.T..A....T.......... ATGACTGATCATGCGCTGGCTGGGGTATGGGG 235640 28 92.9 32 .G..........A............... CCCGATGCACAGATGTCTGCTGAGACACAGGA 235580 28 78.6 32 T.........TCACG............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 235520 28 89.3 32 ...........CAC.............. GCAATTGCTGAAATCGATGCACAAGCGGCTGT 235460 27 82.1 0 ............AC........-...TG | ========== ====== ====== ====== ============================ ================================ ================== 10 28 91.1 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGCTGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCCAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACTTTAAC # Right flank : CTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCCAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCAGCACTAAGCGATTAAAGAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTCAGCGCTGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGACTTTTATCTGACGCAGTGCGGTGACCTGTGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCTCCTGCTATCAGGCTTCACGCGCCAGAATCGGT # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 244952-245220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGO010000009.1 Pectobacterium versatile strain A546-S4-A17 A546_(paired)_trimmed_(paired)_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================= ================== 244952 28 100.0 32 ............................ TTCTACACATGCTATGACGCCGGTGTCACTGT 245012 28 100.0 32 ............................ AGCTATCCAGCGCGTTAATTGCAGCCGCCATT 245072 28 67.9 93 ...................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTATAGGCAGCTTAGAAAAAACAAGCATATCGACCACATTGACGGAAATA 245193 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================= ================== 4 28 92.0 53 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACAGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CCCCCTTATTTGTTCAGTAGATAGTCGTTGATGTTCACTGCCGTATAGGC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-2.24, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 102525-100727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGO010000007.1 Pectobacterium versatile strain A546-S4-A17 A546_(paired)_trimmed_(paired)_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102524 29 100.0 32 ............................. TCGTGATTTCCGTGCTTAACCTGCAAAGCGAC 102463 29 100.0 32 ............................. GATTTCTAACAGTTCAAGTTTCTGCTCCCGCG 102402 29 100.0 32 ............................. CAATCAATATTACAGGGGTGAAACATGAAACT 102341 29 100.0 32 ............................. ATACATCAGAGTACAGCGCTAATGTGCGTGAA 102280 29 100.0 32 ............................. CTGCTGCATGATTTCCTGTGGTGATGATCCTA 102219 29 100.0 32 ............................. CGGCCCTTTGAGTTGAGTTTGGTTTGATTAAT 102158 29 100.0 32 ............................. CCCTCCGGTAATTCGATTTCATCACCAATAAC 102097 29 100.0 32 ............................. TTGGAATCGCTGGTTTCAGAATCTCACCAGTT 102036 29 100.0 32 ............................. CGGGATTAGTGCAGCCGGTAACATGGTAACAG 101975 29 100.0 32 ............................. GCGGTGAGTGATGCTGATAGCAACTAAAGGTG 101914 29 100.0 32 ............................. GTTAGACCATTCGCTAATCTTTAATTTGCTTT 101853 29 100.0 32 ............................. CCTGCTGACCTGCTACGCCATATCGAGGGCAA 101792 29 100.0 32 ............................. CACGGCTAGCCTAACCCCTTGCATCTGGAGAC 101731 29 100.0 32 ............................. CCCGTATTCATCAGGGTTTAGCGTCCAGTCAT 101670 29 100.0 32 ............................. CGATGACTGAATATCACCTCAAATTGCCGTGG 101609 29 100.0 32 ............................. TCCGCCGATATTTGAAACGAATGATCCAGCTG 101548 29 100.0 32 ............................. GGGCTGCGCATGCATAAGATCAAGGTCGTGGA 101487 29 100.0 32 ............................. TTCACCACCAATTGATTAGCCTCAATAGTGGT 101426 29 100.0 32 ............................. CCGGTAAAAAAAGAGATTCGTGGACTGGCATG 101365 29 100.0 32 ............................. TCACAGGTGCGACGAACTACATGCATTGTGGT 101304 29 100.0 32 ............................. AAATGAAATTTTTCTGGGTATGGGAGCAAAAA 101243 29 100.0 32 ............................. TAGCTAGGGGCTACAGGGTCAGGTTGTTTTTG 101182 29 100.0 32 ............................. TTCGTCAGCGTCCTGCTGTGAGTTAAAGATAA 101121 29 100.0 32 ............................. TGCCCCCACTCATTTCCTAATAACGCTGGAAT 101060 29 96.6 32 .............T............... CTCGCTGGAACCAACGACTCCCTGCTGATTAA 100999 29 96.6 32 .............T............... GCAGAAATTGCCGTCATTAGCACGGTTACTAT 100938 29 100.0 32 ............................. ATGGAAAACATCATTGCAATGATCCGTCAGTC 100877 29 96.6 32 ............................A TCGAGTGCGTCTTCAAGCGTCGGCACTGGGTC 100816 29 100.0 32 ............................. GCAGGCTGTTGTCACAAAACTACTCAGTACGG 100755 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGGTTGCGCGGCAGGCTGGCGGTGTGGCTATTGGAAGTCCGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTGAGAGAGATGGTCTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGTTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGGTCTTTAACAACATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGA # Right flank : GGCTTATACCCCTTATTGCATGTTGGTCTAAATATCCCCTACACGGGGTCAAATTCCGCTTCTGGTTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGATGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCATAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //