Array 1 40612-40777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJRY01000031.1 Schinkia azotoformans MEV2011 M670_Contig0066.31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 40612 32 100.0 35 ................................ CCCACTAGCTAGGATAGTATCATCCGCCCTCATAA 40679 32 100.0 35 ................................ CTATGACCGTTACAAGTTGGGAAGGGGAATTTATA 40746 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : TAGATGAATACCCACCATTTTTGTGGAAGTAGGTGTAATATTTGTTAGTGTTAATTACGTATGATGTCAGTACAGTTAGTGGTTCGGGGCAGAAAAGATTGCGGAAGGTTGCAAAAGTGTGTCAAAACTATGGTCAGCGGGTTCAAAACTCAGTGTTTGAATGCATTGTAGATGCTGCACAATTTACAGCATTAAAATATGAACTTGCCGATATCATTGACCACAATCAAGATAGTCTTAGATTCTATCAGTTAGGTAATAATTATAAAACAAAAGTAGAACATATTGGTGTAAAAGAATCAATAGATTTGGAAGGACCTTTGATTTTTTAGTGCGAATGTATAGTGAACATAGAATTCCATATACATTCGCACCGGTTTTTCACTGTTTTTTTTGTGGATTTTGTGTATTTTTGTTAAGTGTTCTTTATTTATTTAAAGAAAATAGCGAGTTTCAGAACAAAAAGTGCAATATTATGCTATTTTTGTTCGGGATTCGCT # Right flank : GGGGGCGAGTCTTTACGACCGGACGCGAAAAATTGTCGCATCCCACGCGGATGCGTGGA # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-166 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJRY01000032.1 Schinkia azotoformans MEV2011 M670_Contig0067.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1 32 100.0 35 ................................ ATCACAAAGGTATCCCCTTTCCGAGTTTTGATAAT 68 32 100.0 35 ................................ TGTTTTTTGTTGCTCTTTTTGAGAAGTGCTAACAC 135 32 84.4 0 ...........................TGGTG | ========== ====== ====== ====== ================================ =================================== ================== 3 32 94.8 36 GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Left flank : | # Right flank : GAAGCTAAGATGACTGCGAATTTAATCAATGGTCTAATATTAATTATTATTGTAACAATTCTAATTTGTTTGTAGGGCAAGTTGGCAGATTTAGTAGATTAATGAAACTAGTGGAGATAGACGTAAATGGAGTTGGTAAATTATGATATAGAGAGATAAATCTTTCTCATTGATTTCTGACTAATTTATTTAAATCCTTAATTTCGGCCCCTTACTTGATAGAACGACAGGAAAGCGTTTCAATGATTCATTCTTGGTTTCGAACAAAAGCTTTTAATTCCTCATATTCATATTGTTCTGGGATTTAACTGATTACTTTCAATATCTGTTGTTGTCCATCTTTTAAGTCCAGTTGGCTGATCTTTAATTCATTCATTTGACCCTCGAGGTCTGATTTTAAATCAACCATCTGACTTTCTAAATCAGTCTTTAAATCTTTAACTGGGTCTTCCAAATCTGTCTTAATATTTTTAACTTGGACTTCTAGTCCATCCAACCTT # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 39921-40323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJRY01000032.1 Schinkia azotoformans MEV2011 M670_Contig0067.32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 39921 37 100.0 35 ..................................... TTCTTATGAAAGTGGGTACTATCCAGCGGTCGATT 39993 37 100.0 35 ..................................... ATCAAATGGTCATAACCGACAACCCCAAAGGAATG 40065 37 100.0 39 ..................................... CCATAATTCGGCATCCCTTGATAACTAAAATCGAAAATA 40141 37 100.0 36 ..................................... GTGTCTACACCCGTTAACCCATCTGTTTTTCTTCCC 40214 37 100.0 36 ..................................... TCACGGAAACCGTCTGGAATGCGATTAGCACCGCGC 40287 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 36 GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Left flank : CATTTGTTGTTGCTCAAAGCTTTGATTCTTTTTGGGTTGTTGTCCTGTTGTGTTCATATAGTTACTCCTTTCCTAGTAGAAATTAATTATTTGTAGTTTTCTACAAATTAGTTTATTTATCCACAAAGACAAATGCGCTTTATTCATCAAGTTTACACAGAAAATCCGAACTGTCTATTGGTACTTTAAAAGGTCCTCTTGTTTGTATAGCATTGCTTAGAAAATGCGCTACTGATGGGAAAGCCTGTACCTCACAGTATCCAGCTTCCTCTTCATACATTCTGGAGAAAATATTCTGATGTAATACTATAAATAATAATTGATGCTAATTTATTGGAGAAAATAAAGGCAGCATATCAAATATAGAATTTAAATGTTTTTCGAAGGCGGTCCTATAATTAATGCAATTTTATTATCTTCGAAAAAATAGCTTAATTATCTACATTACAATTATTCGAAAATGCTGATATAATAATGTTTATGAGGGCTACAAATTTGCA # Right flank : ATCCAAAATAATTTGGAAGATCCTTCTGAGATAAAGCCAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCAAAGATAATGACCCGTTATAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : NA //