Array 1 19400-20122 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGS01000022.1 Methanobrevibacter thaueri strain DSM 11995 MBBTH_contig000022, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ============================================= ================== 19400 39 82.1 30 .............G..G.C...A........AA.....C TATTAGATTCAGTGGTTCAGGTACTGTGTC CAAA,G,G [19426,19434,19438] 19475 39 87.2 33 ..............C.G.C............AA...... TGCAGTTTACTTCCACAGTACTGGTAATGTGAC CTG [19504] 19550 39 100.0 39 ....................................... TGCTATTTATTTCGTTGAGAATTCTAATGGTAATGTAAA 19628 39 100.0 39 ....................................... TGCTATTTATTTCGCTGAGAGCTTTAAGGGTTATGTAAC 19706 39 79.5 33 .......G......C...C...A....A.C..T...G.. TGCTGTTTTCTTTTATAGAGATAGTACTGTTAA AAA [19737] 19781 39 76.9 45 ..............C...G...A.....TCCA.A.A... TGGTGGTGGTGCAATTTGGGTTTATTATGGTAAATTTAATGTAAC 19865 39 82.1 36 ......................A.....GGTA...AG.. TGGTGGTGCTCTCAACATGGTTTCAGGTAATGTAAC 19940 39 82.1 33 ......................A.....GATA..AA... TGGTGCTTTCTGGGTTCATTCAGCTAATGTAAC 20012 39 100.0 33 ....................................... GGCTACTAAATTTGAAGGTAGAAGTAATGTAGC 20084 39 100.0 0 ....................................... | ========== ====== ====== ====== ======================================= ============================================= ================== 10 39 89.0 36 AAATTGTAATTTTATTAATAACTCTGCTATATCTGGTGG # Left flank : GATAAGAATGTCACTGGTCTTGATGAAAAGGTCACATTCACACCAACAAGTCTTGGAACTGGCAGTGTAACTGCAACAATAGGTGATGTGGCTTATACAACAACATTAACAGTCACAACTGACGGAACAACATTCTGGGATTTGAACCAGACAATAAATGGCAACACAAATGACACCATTACATTAGATAAGAATTATGCTTATAATCCTGCTTCTGATTCCGCTTTTATAGAGGGTATTGCGATAACTAGGCAGGTTACAATAAATGGTAATGGCCATACAATTGATGCTAAAGGCCAGGCACGTATCCTTTTGGTTATATGCGATAATGTAAATATTAATAATGTTACTTTTCTAAACGGTAAATTTAGTGGTCATGGAGGAGCAATATTCTTTGATAGTACTGGTAATGTGACAAATTGTAATTTTACTAACAACACTGTAACTGGAGATTACAGTTCTGGTGGTGCAATTTTCTTCGTGAATACTGGTACTGTGAC # Right flank : GGGCTATTAAATTTGAAGGTAGAGGTAATGTAACAAATTGTAATTTCACCGGCAATAAAGCAAATACAGGTTCTGCAATTTACTCCAGCAAGTTTGGATCATCATATGTTTCCAATTCTTGTTTCTTAAACAATAAAGCAAATGTTGAAACTTTAGATGTAGTTAAAAACGAAAATAATATTACCATTACATTTATGGGTCAGGATAACCTTTTAAATGCAATCTATTCAGAAAATAATGTTGAAGTCACCTTTAACAATGTGACTTATTGGGGTGCAAACGGCATTACAACTATCAGTTCCGCCAAATCCGGATCCAATAGGGAAGCCGGTCAAAACATAACAATCGGAATAGTTGTTAATGATGTCATTGTTTTAAATGAGGTTAAAGTCACAGATGAGAACGGTGCAATTGTTTTGGATATAAGTGTTGGTGGAAATTATTATATCAGTGCCCGCCATGATGAGGATTCATACTACACACAAGCCGAAACAATATTG # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.50, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTGTAATTTTATTAATAACTCTGCTATATCTGGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.36%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [11-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 83615-81222 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGS01000006.1 Methanobrevibacter thaueri strain DSM 11995 MBBTH_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 83614 37 100.0 36 ..................................... TTATTTTGATTACACTAAAAGAACTATTTTTTTAAA 83541 37 100.0 36 ..................................... TTATTTTGATTACACTAAAAGAACTATTTTTTTAAA 83468 37 100.0 35 ..................................... AATTTTTCCAGAACTCATAATACATATCGAATTCA 83396 37 100.0 36 ..................................... TTTTTAGCCTTGTAATCAATAGCCTCAATCTTGAAG 83323 37 100.0 36 ..................................... TTAATTCCACTCATAATAATCACCTTATCATCTCTT 83250 37 100.0 35 ..................................... GTTACTTTTATGTTTATGCAGTTGCTCATTTTTTT 83178 37 100.0 35 ..................................... TTGTAGTCATACCATATTTCACCATTGCTTATAAA 83106 37 100.0 36 ..................................... TCCGCCAGCCTGTCAGCTGTGTATTCGTATGCATGG 83033 37 100.0 35 ..................................... TCTATTTCCTCTATTACACCGTCTGAGACACCCAT 82961 37 100.0 37 ..................................... GTATCCCATTCCACAATCTGGGGTCACAAATTCGTCT 82887 37 100.0 34 ..................................... CATACTAAGTTCTCCGTTCTTATTTTTTAATAAT 82816 37 100.0 35 ..................................... TCGGTGAAAGAATCGTCAACGATTTTGTTTTGCAA 82744 37 100.0 35 ..................................... TATATAAAGGTTTTGGTAAATTACTACAAAAAAAT 82672 37 100.0 36 ..................................... CAAGTTTAGCAACAGATTTATTCAAGAATACTTGGA 82599 37 100.0 38 ..................................... TTTAAAAAGTCATTGTTGTATCCTTTATTTATATTGTC 82524 37 100.0 36 ..................................... ACCAAAACATTGCTTTTTTATTGTCTTTTTCAATTC 82451 37 100.0 39 ..................................... CTAATTCCAACTACTTTGTTATGTCTTTCGCTCCAACTT 82375 37 100.0 38 ..................................... CCCTTCTTTCTTTCATTGCAGGGGTAACTGTTGCATCA 82300 37 100.0 38 ..................................... ATTAGTTAAAACAGTATCTCCATGTTGTTTTTCTTTAA 82225 37 100.0 38 ..................................... TTAAGCAGATACTATTCTTTCCAATTCCTACAACTTCT 82150 37 100.0 40 ..................................... TCGAAATCAACATCGTGTTGCGCTTCGTATTCTAACTGCA 82073 37 100.0 36 ..................................... ATTTTAGTTTTATTATTCATAAATACCACATCTTAT 82000 37 100.0 38 ..................................... CTTTTTTAAGTCAAAACGGGACACGTACGCTATTTTAA 81925 37 100.0 36 ..................................... TTTTCAATATTCTCAAATAATTTATCCATAGTTTGT 81852 37 100.0 36 ..................................... ATTGTTTAACTGTTTTGTTTACAAATTTTTTATTGT 81779 37 100.0 37 ..................................... TCTTCACGAAACTTGGCTTTTGCCTCATTCTCCTTAA 81705 37 100.0 37 ..................................... TCTCTCCATGTCGTTTTTATAGTCGTGCCAAATTTCC 81631 37 100.0 40 ..................................... TCTTTCGATTCTTGCTAATTTTCTGTAGGAGATTTTAACT 81554 37 100.0 37 ..................................... TTAGAACGCTTATTTCACTTTTTAGCGCTTTTTTAGC 81480 37 100.0 36 ..................................... AAATTTTCCCCCCTACAAATTCTTTTTCTTTTTTTT 81407 37 100.0 39 ..................................... CTTTTTCTTCTTTCAACTGAAACATTGAGACATACTTCC 81331 37 100.0 36 ..................................... TGCATTTGCTCTTGTAGCAACTCTTTTTCTAATGAG 81258 37 91.9 0 ..........................T.....A..G. | ========== ====== ====== ====== ===================================== ======================================== ================== 33 37 99.8 37 ATTGCAAAGGAGTTTCCACTAAAACAAGGATTGTGAC # Left flank : ATGGTTTCGTATACATTGGTGAAGAGTGTAGAAAATTACTTGTCAAAACGGTCTTGGATAAATTAAATGGTAACGTTACATTTGATGGAATTCAAAAAACTTATTCTGATTTTATTGAAGTTGAATCTAAAAATATTGTGAACTTTTTGATGTATCAAACCCCTTATAAAACATTTTATATTAGATGGTAAAATGTGGCAACCTCCACTTTTTTGACTATTTTTAGATAATAACCTAATTTTTGTTAAAAATTTATTTTAATTTATTTTTGGATAAACCTAAAATAAAGATAAGGAAAGTGCTTTAATTTTAAGATTTAGTAACTCAGCTGTTCTTATCCTTTTTTAATTATTATTCATTTGAGGATTAATTAATAAAGTATTTATATTAAGTGTGCGAATCTTTATATATGATGGTTTAAATTTTAGATTCCCACATTAAGGTTGAAAATCACAGGCTTCTGAGCAAGTTATAGTGTAAAATAAGAAAATTTTTCCGCT # Right flank : CTTTGAACAGTCAAGATATAGATTAAAATGGATATTCCAAAAGATTTTCCACTAAACTATTGAAAAATTTATAATATATTAAAACATAAATAAACACAAGTTATATTTCTGGTGATAAAATGGATGATAAAGAGCTATACACTACTATTGTTGGATTAAAAAACTATGAAGGTAATAAGGTTTTTAAAATTGGGTCTATTGTAAGATTAGTTAAAGAACCTGATAATGATTATGACCTTGAGGCTATTGCATGTGAGAATAAATATATTGGTAAAACCGGATACATTGCTAATAGTGCTAACACAGTGACTAAGGGGACTATGAGCGCCGGCAGAATTTATGACAAAATAGGTGATGTCAGCTACTGTGAGGTTAAGTTTGTCTCTAAGGATTCAGTTATTGCTAAAGTTTTAAGCGATGATAAAATCGAGGAACTTAAAAAAGAAAATGTTGAGGATACATTTTTCAATCCGCAACTTGATTAATAGTGTTTTAAGTGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGGAGTTTCCACTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 95117-93044 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZGS01000006.1 Methanobrevibacter thaueri strain DSM 11995 MBBTH_contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 95116 37 100.0 36 ..................................... ATTATGCAAGTTAAATAATGAAATACTTTTAAAATC 95043 37 100.0 35 ..................................... TCCTCCCATACAGCCATAATATATTTTTTATTAGG 94971 37 100.0 36 ..................................... ACTTTTTCCGACCATTTCTTCTGCTAAATCAATGAT 94898 37 100.0 36 ..................................... ATTTCAAAATCATCACTATCAATATATTTCCTTATG 94825 37 100.0 36 ..................................... TGATATAAAAAGCTCATGTTGTATTTGTTTGCTTTC 94752 37 100.0 36 ..................................... CTTTCTTTAGGGAAATACGCATTTTTCATTAAGTTT 94679 37 100.0 36 ..................................... TCCAACTGTGGATTGAGTGGATCTACCATCTCTTTT 94606 37 100.0 35 ..................................... TGATTACTGGAAACAGATTGTATTGAAATGTTTAG 94534 37 97.3 36 ................T.................... CGATAAACAAGCATTCATCGTGGATTTCATCAAAAT 94461 37 100.0 36 ..................................... TGATGGTGACTTTTCCTAAAGAAATCATTTGTTCTA 94388 37 100.0 35 ..................................... TTAATGTTTTGCTTTTTCATAATATCACATCTTAT 94316 37 100.0 36 ..................................... TCAATCTCTGTTTCGCTGTATACTTTTACTTTTTGC 94243 37 100.0 36 ..................................... TCATTACCAACCATATCTTTTAAAGGTTGACATTCT 94170 37 100.0 36 ..................................... CATTGATTCTCATCTCATAACGAAATGGCTTATTAG 94097 37 100.0 35 ..................................... TGGTATTTGCCGCCTCTTTGGTTACTACATATTAA 94025 37 97.3 36 ................................T.... ATTTATATGATTTTCAATTTCAGAATACATTTTTAA 93952 37 100.0 36 ..................................... TTTGTCTGTTACTTCTGAGTTTAACCATGACTTTCT 93879 37 100.0 35 ..................................... ACAGATGAGATGCTACCATAGTCATAACCAAATGA 93807 37 100.0 36 ..................................... TCTTGTATGTCGTAGTGACTGCAAGCGGCTATATAG 93734 37 100.0 35 ..................................... GACGGCAGGAGATTACTACTTCACCGATTATTTTT 93662 37 100.0 36 ..................................... TTGAACTCCACTGATTTATAAGCACTGAAACACTGG 93589 37 100.0 35 ..................................... ACCACCTGTGCAGTGGTGCTAAATTCTGTGTATGC 93517 37 100.0 35 ..................................... CAATCAACAACAATACAACAATAAGGAATAATATT 93445 37 100.0 37 ..................................... AATATTCCTGAAAATTCGACTTCAATGAAGTACTTTT 93371 37 97.3 35 ....T................................ CAATCAACAACAATACAACAATAAGGAATAATATT 93299 37 100.0 37 ..................................... TTGTATAAAATCCTGTTACTTTTGCAAGTGTAACTGG 93225 37 100.0 36 ..................................... ACTTGATTTAACTTAGTCTTAGTAATTGGTATTTGA 93152 37 97.3 36 ..................T.................. GTTTTTATTTTAGTTTCTATTTGATTGTAAATATCA 93079 36 89.2 0 ................-.......T........AA.. | ========== ====== ====== ====== ===================================== ===================================== ================== 29 37 99.3 36 ATTGCAAAGGAGTTTCCACTAAAACAAGGATTGTGAC # Left flank : TGTTGATAACTATAAAATAAAAATTTTATACAGGTCAGAAGTTTACTCTATGAATCTTTGTTTTTTAAGAGAAAAATATTTTTCAAAAGCGATTTAATCAAGCATTCGTGGTGATAATTATTAAGTCATGATATAATCATTGTATTAATAGTAAGATTATAATTTATAATTAACTTTTATTTTTTTGGATTTTTGTGGCAACCTCCATTATTTTTTAGATTTTAAAATTTTCAAAATTTTAATAACTTAAAGTAATAAAAAATTATTTGGATTTTTATCTGAAGTTATATGTTTTATTTTGTTTTCATCCATTTAAATCAAGTATTAAGAGTTATTTTTCTGTTTAGATTTTATATAAAATTCAAATCTTTTAAAAAATTATTTATATTAAATGTGTGAATCTTTATATATGGAGGATTAAATTTTAGATTCCCACATCAACGTTGTAAATCACAGGCTTTTGAGCAAGTTATAGTGTAAAATAAGAAAATTTTTCCGCT # Right flank : TTCCAAACATACCACATGCCAGTGAAGTTTCCTTCAATTGCAAAACGATTCTATTAAAACAGGGATTTAATGTACATATTTAGGTAACTTTAAATATTTTTTAAACACAATGTATTATTATCAATATAATGGAGGTTACCTCTAAATGGATGATTATACTAATTTGAAATTTGCTAGTCTATTCCACGATATTGGTAAATTTTACCAAAGAGCGGACAATCTGGGTAAATCTAATCATGCATATGATTCAAAATATGAGAAATTGGATGCAAGTGATTACGGTTCCTCAGGGGCTCATTCTAAATGGTCAGCAGATTTTGTAAAGGATTATTTTGATGATATGGTTGAGGATTTAGTTTTATACCATCACAATCCTTCAAAGTCCAGTTTTCCGGATTTATGTAAGATCCTTAAGAAGGCTGACGAGCATTCATCAAAGGAACGTATAGACGCTGATGAGAAAGGTGACGTTCTAGCCACTCCATTGACTTCTGTCTTTT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAAAGGAGTTTCCACTAAAACAAGGATTGTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //