Array 1 601551-603165 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028196.1 Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 601551 29 100.0 32 ............................. CTGTCACGTGAGCGTGAGCGCAGAAACGCACT 601612 29 100.0 32 ............................. CGTGGAAGGCGCAGATTCGTGGCGGTGCAGCT 601673 29 100.0 32 ............................. AATACAGACGCGGCAGTATTTGTGGAGGCGGC 601734 29 100.0 32 ............................. AAATCCAACCCGACGGCACGGGGTTGTCAGTT 601795 29 100.0 32 ............................. GGTACGCTCAAACAAATTTTTGTTGGTCTCGC 601856 29 96.6 32 ............................A GTTCCTCGCCGGGTGCCAGCCTGTCGTAGATC 601917 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 601978 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 602039 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 602100 29 100.0 32 ............................. TAATCGCGTGCTTGGATTGTGGCGCATCCTCC 602161 29 100.0 32 ............................. AATTACGTACGTTTGAGGGGTTGGGGATTCCG 602222 29 100.0 32 ............................. CCCCACGCAATGGCGCTAGCACTGGTTACGGG 602283 29 100.0 32 ............................. AGATAAAATCAGAAATTTACGCCGAACTTCAA 602344 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 602405 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 602466 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 602527 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 602588 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 602649 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 602710 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 602771 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 602832 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 602893 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 602954 29 100.0 33 ............................. CGCCCTTTCATCCGTTCAGGTGGATTTCATGAC 603016 29 100.0 32 ............................. ATGTTTAATTTTGTAGCCCGCTACCTATCGCC 603077 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 603138 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAACCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 619436-620319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028196.1 Salmonella enterica subsp. enterica serovar Concord strain CFSAN018747 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 619436 29 100.0 32 ............................. CGCAGGACATCGGCGAGGATTGGCCAGGCCAT 619497 29 100.0 32 ............................. CGAAATCAGGCGTTTTTGGGTTTTCCTCAGTA 619558 29 100.0 32 ............................. GCTTTATGCTGCAAACTCTCCATCTCGGGAAG 619619 29 100.0 32 ............................. CGTAATTGGTAGTTCATCCGCTCATTTCATAT 619680 29 100.0 32 ............................. GATCAATATCCGCCACCTCTTTACCATCAACA 619741 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 619802 29 100.0 32 ............................. TATCACGGATAGGATATAAACACGGTTAAAAC 619863 29 100.0 32 ............................. TCGCTGTTAACCGCTCTCGCACTGCGTCAGGC 619924 29 100.0 32 ............................. CGTTATCTTTTGAGCAGAGCACGCCGGGGACG 619985 29 100.0 32 ............................. ATTACTGATTTGTTCATTTTAATTCCCTTTGT 620046 29 100.0 32 ............................. GCATATGGAGAATACATTTACTCAGTGAATAT 620107 29 100.0 32 ............................. TTAGGGCATTCGGTCATAACGGATACGCCGCC 620168 29 100.0 32 ............................. AATATTTCTGGCGCCAGGTGCATTCCGTCGCA 620229 29 100.0 32 ............................. TTCTCTGGAATTATATTTTGTTCCGCACGTTC 620290 29 100.0 0 ............................. | A [620317] ========== ====== ====== ====== ============================= ================================ ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //