Array 1 2634-41 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYR01000009.1 Corynebacterium striatum strain 1961 Contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2633 29 100.0 32 ............................. CTTTTTATGCCACCCCGCCTCCTTGACCCACC 2572 29 100.0 32 ............................. CCATGAAAGGACCCTTCTGATGCTCACCGAAC 2511 29 100.0 32 ............................. GGACAGCCACGGGTGGGGAAAATCAATGACCA 2450 29 100.0 32 ............................. CTTCCAATCATGCGGTTGAGTAGTGGCTAAGG 2389 29 100.0 32 ............................. TACAAGCGACAAGACATGCCTTTGCATATTTG 2328 29 100.0 32 ............................. CGTTGAGTATTTCTACCAGATCGTCCATGATG 2267 29 100.0 32 ............................. GAATCCAACCGACTACTACGCAACATCAAGGG 2206 29 100.0 32 ............................. CACATCCGGCAGCTGCACTTGCACTACCCAGA 2145 29 96.6 32 ............................G GGTTACGAGTTCTGCCGGGTCAAGGGTGAGGT 2084 29 100.0 32 ............................. CGCACAGGGGAACCAGGGCCACCAAACCACCA 2023 29 100.0 32 ............................. CGCCACCGGTGTTACCGCCGGATTCAATGAAT 1962 29 96.6 33 ............................A CGGAAGCACACAACCACACATCTACCTGGGAGA 1900 29 100.0 32 ............................. TTGTCGCTCTCAACTTTCCATTTGCTCATGGC 1839 29 96.6 32 ............................T TCAGCGTTGGGGGATTGGACGGTGTACACCTT 1778 29 100.0 32 ............................. AAGCAGGTTGAAGACACGCTGTTTGCGTTTGT 1717 29 96.6 32 ............................G ATGCATTAAACCAGCATGACTATGATTTGTAT 1656 29 96.6 32 ............................G GGTGACGAGTTCTGCCGGGTCAAGGGTGAGGT 1595 29 100.0 32 ............................. ACGACAGACGTATTTCTCGACGGAAACGGAGC 1534 29 100.0 32 ............................. GTGACCAGCTCGCCGATTTCCCCCACGCGGCC 1473 29 100.0 33 ............................. CTCGACTGGGCAAGCGACCTCACAGACGAACTC 1411 29 100.0 32 ............................. TCTTCGACCTTAGCCTTGACTTTGGCATTTAG 1350 29 100.0 32 ............................. GCGGCCACCACAAACACCCCAACGCCCCCCAC 1289 29 100.0 32 ............................. TCCTGGCAAACGTCTAGCAAATGCTTAGCACT 1228 29 96.6 32 ............................G TTGGGGGACTGTAATACCGTAGCTTGATGCTC 1167 29 100.0 32 ............................. CGTTGATTGGTGGCAGATGTGGGCCGAATCCC 1106 29 96.6 32 ............................G TAGCCTTCAACGCCCTCAGCGATATCGGGGTC 1045 29 96.6 32 ............................G CACAGCCCAGCCCAGTACCCGGCATCAACCGC 984 29 100.0 32 ............................. ATGAGCCTTAATGTGCAGAAGAAACGCGACCA 923 29 100.0 32 ............................. TCAGCGGCGGTTTCTCCCATGGGAGTTCAATC 862 29 96.6 32 ............................G ACGCTTAGCTAAAGGATGATCCGCAGGGATAG 801 29 100.0 32 ............................. TCAGTGGTATCCATGAACACTGTCGGGGAAAC 740 29 100.0 32 ............................. ATCTACGCCTTGGAAGCCATCGACCTCACTCG 679 29 100.0 32 ............................. CCGGCACAACACGACCATCCGACAGCGTCACA 618 29 100.0 32 ............................. CACTGGCATACGTCCTTGACGGCGGCTATTAC 557 29 100.0 32 ............................. AAACGAAACGCGATCCCCCGGCTTCCAACCCG 496 29 100.0 32 ............................. AGCACGTTCCGCAGCGATCAACCTATCCGACT 435 29 100.0 32 ............................. CCCGGCGGCGCGGGCAATTTCAGGCAACAGCG 374 29 96.6 32 ............................T ACCGCGTGGCGTGAGTTTGCCGCCCTTCTGCA 313 29 100.0 32 ............................. TAGCCCGCACCGACTACGCCGGCCAGTTCAAA 252 29 96.6 32 ............................G TCGGTACTAAGCCGACCAGTGACGTGGAATGG 191 29 100.0 32 ............................. CGCATGTGGACGGTTGAGAGCGCCGACGCTAA 130 29 96.6 32 ............................T AAACCCCATTGGACAACTAGGGCCAGGGTTCA 69 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : CTGTCCCGAA # Right flank : GCAAGAAAAGGAGCAAAAATGACCACCTACTAGTCCGCCCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 81093-82033 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAYR01000006.1 Corynebacterium striatum strain 1961 Contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 81093 29 100.0 30 ............................. TCTGGGCCGACAAATAACCCCCCAAAAACC 81152 29 100.0 32 ............................. CCGCACTATGCGAAACGACCCGGTAATCCGGG 81213 29 96.6 33 ............................A GCCCACGCCCTTTTCGAAAAACTCTAACCACAA 81275 29 100.0 31 ............................. GCATGTGGACGGTTGAGAGCGCCGACGCTAA 81335 29 96.6 32 ............................T AAACCCCATTGGACAACTAGGGCCAGGGTTCA 81396 29 96.6 32 ............................G CAAGAAAAGGAGCAAAAAATGACCACCTACTA 81457 29 96.6 32 ............................G GTAGTCACCGGTAGGGGGCATGGGCCTAAATT 81518 29 100.0 32 ............................. TGAAAAATGTACACACCAGGTTGTGATACAGA 81579 29 100.0 31 ............................. TGAAAATGTACACACCAGGTTGTGATACAGA 81639 29 96.6 32 ............................T CGCTAGGTTGATAACCGGAACGTGTCGGTTAC 81700 29 96.6 32 ............................G CTCGGCGCGGGCGATACCCGTCTAATCGTTCC 81761 29 100.0 32 ............................. GCATCAACCGCGAAGAACTCAACCAACGCACC 81822 29 100.0 32 ............................. ACACTAGTATGGCGATGCCAGCACCCAATACA 81883 29 100.0 32 ............................. TAGCCGCTACCATTCCACCTGCCATGTGCCCG 81944 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 82005 29 89.7 0 ................T.....A....G. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.9 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGTTGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGAGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCAAACGGTCCCTACATCCTCATCACAAGATACGAGCAATCCCCATTTATGTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCCAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.83, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //