Array 1 35440-31936 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYVL01000010.1 Bifidobacterium pseudolongum subsp. globosum strain 1546B Contig_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 35439 29 100.0 32 ............................. CTTGATTTCATGGACGACACCGACCGGCGTAA 35378 29 100.0 32 ............................. GAGGACTACATGGTTTTCAACGGGGCCGCCGA 35317 29 100.0 32 ............................. GCGTGCAGGATCGTGGACACGTCACAATCCAA 35256 29 100.0 32 ............................. GTGTCATGGGCCACCGAGACGCTCAAGAAAGG 35195 29 100.0 32 ............................. ACCATTGCCAGCCCTTCTGGAATGGTTGGATG 35134 29 100.0 32 ............................. GCACCATTGACGCCAGGAAGCAGCGTACTGGT 35073 29 100.0 32 ............................. TGTTGCACCATGCCGGTCATGGCCGAACTGGC 35012 29 96.6 32 ............................T TGTTCGGTTCGCCCATCCAATATGTTTCGGGT 34951 29 96.6 33 ............................A CAGCGCCCTGCAGGCTCGGCTCGCCACAATCGG 34889 29 100.0 32 ............................. CTCCTCAAGGACGCGTTCGGCATCGTCTGCGA 34828 29 100.0 32 ............................. AAATCGACCGTGACCGCGACGGAAAATGGCCG 34767 29 100.0 32 ............................. GCGCCGCCCTTGACGACCGCGCCGTCGAAAAA 34706 29 100.0 32 ............................. CCGTAACGACGCATAAGAGAATCAATGCGCTG 34645 29 100.0 32 ............................. GTGCCGTAGACGTCCACGAGCGCGGACTTGCC 34584 29 100.0 32 ............................. AGGACGCGGGCGGCACCACGCCGGACACCAAG 34523 29 100.0 32 ............................. GCGACGCTCGTACACACTCTGTTGAGGTTGCG 34462 29 100.0 32 ............................. GCGCCGATGAGTTTGACCATCGCGTCTCCTGC 34401 29 100.0 32 ............................. ACGCTGCCGCGCGCGTCCACGAGGTCGGCGAG 34340 29 100.0 32 ............................. ACTTAGAAAATTCGTGTTTTCACCTCCCCTCT 34279 29 96.6 32 ............................T TGGCCGACGCCATCCCCGGCGCATCGGGCAAA 34218 29 100.0 32 ............................. GCGGCCGTCACGCCCGACCATGTGGACAGGGG 34157 29 100.0 32 ............................. GCCGTCATAGAACTCGCCTACCTGCGTATCCG 34096 29 100.0 32 ............................. GTGTCGAGCACGTCCTTGCCGTGCTTGAACGC 34035 29 100.0 32 ............................. ATGGGACTAGCAGAGTTGCGAAAAAGTAAGAA 33974 29 100.0 32 ............................. ACGAAACCACCCACCATCCAATCGTTCACCGC 33913 29 100.0 32 ............................. AATTCTACAATTTCCGCGTAACGTTTCACGCT 33852 29 100.0 32 ............................. ACGTCGCGGCGCTCGTCCGCAAGGATACGCAC 33791 29 100.0 32 ............................. ATCGCTTTCAGCTGCGCGAACTGGGCTTCGAG 33730 29 100.0 30 ............................. AGAAAAAAGGAGACGTTTTTCAAGGATATT 33671 29 100.0 32 ............................. TGCTGCGCGTCGTCCACATTGTCCATGCTCGG 33610 29 100.0 32 ............................. CTGTCGAGATCATGTTCGAACGCGACGAGCAC 33549 29 100.0 32 ............................. ATCGCCTTGAGCTGCGCGAACTGTGCTTCGAG 33488 29 96.6 31 ...............A............. TGCCGCTCGTCTCGTCGATCTCGGTCGCGAC 33428 29 96.6 32 ...........................T. TTCCTCGACGGCAGCCAGGAGATCAACACCAC 33367 29 100.0 32 ............................. ACACCAAAGAGCGTGTTGAACGCGCTCGCAAG 33306 29 100.0 32 ............................. GCCCGGCAATGCGTTGAAATATTCCTGCTGTT 33245 29 100.0 32 ............................. GTGTACGGCGGCAGCGACCACACCGACCCGTA 33184 29 100.0 32 ............................. TGGCGGTGGGCAGACCGTCGAGGCTGTTGCTG 33123 29 100.0 32 ............................. TCAGGCTTCGTCGCGCCGATATTTTCCGGCAA 33062 29 100.0 32 ............................. ACGTAAGAAAAAGACTAAAAAATCCTCACCTA 33001 29 100.0 32 ............................. ACGCACAGACCGCGACACCACCCACACCGATC C [32996] 32939 29 100.0 32 ............................. TGAATGCCGGCAGGTCGATGGGGCGGATGAGG 32878 29 100.0 32 ............................. GAACGCCAGATGGAACATTACGGGCGTGATTA 32817 29 96.6 32 ..................A.......... TGTACCCATATGCGATGCTGTGCGCGTTCGAT 32756 29 100.0 32 ............................. GGAACTCGACCGTGGAATCCTCCGGAATGGTG 32695 29 100.0 32 ............................. CTGTTGTGCGAGCGTGGGGGCGGCGGCGGCGA 32634 29 100.0 32 ............................. TCCGCGACACGCCGCTCGTACACACTCTGTTG 32573 29 100.0 32 ............................. AAGCCGCCCATACAATCCACGCCGTCCAAAAC 32512 29 100.0 32 ............................. AAAAACGAACACCAATGGCGTGCCCATGTGGC 32451 29 100.0 32 ............................. ATAGACCACATCACACTGCACATCATGGCAGG 32390 29 100.0 31 ............................. CCCGTGCTGTATCGACGCCATTTTACCCACC 32330 29 100.0 32 ............................. GCATGCGCGACCAACTGCACTACGGAGACACC 32269 29 100.0 32 ............................. CGGGTGACGCGGGCGATGCTGCAGGATTGGGT 32208 29 100.0 32 ............................. TACACCACAGGACGCGGCGGGCACAAGATAGA 32147 29 96.6 32 ............................T ACGGGCCAAGCATCGCTGAACAGTGGGTGAAC 32086 29 100.0 32 ............................. CCGTCGCGCAGGGTGCGTGACTGGATGTCGTG 32025 29 96.6 32 ........................G.... GCGTGGGCGAAACGAGAGCAGGAGCTGTGGCG 31964 29 86.2 0 ..A......T....T.............G | ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.3 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GTGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTTAAAGACGGTAGGGCCATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGAAAAACACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCATTCTGATATGTTGGAATTATTGGGATTTCATAGC # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGAGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCGTTCTCTATGGCGATGAGAAAAACGCCGAGGTCATCAGGAGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCTCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCGTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAGCTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCAGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //