Array 1 87598-90009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBD010000013.1 Streptococcus uberis strain GCPRG120 Contig_13_321.472, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 87598 36 100.0 30 .................................... TCCAATGTGTCAACATCTTCCTCACCAATT 87664 36 100.0 30 .................................... TATGGGTTTTGCCGACGTTGTCAGACACAG 87730 36 100.0 30 .................................... ATGGCAAAGGTGGATATGCGATGACTGGCG 87796 36 100.0 30 .................................... CTGATGGATATGGATAAATACGTACCAATG 87862 36 100.0 31 .................................... CGCTTGGCTATCAAGGAGGGCCAGGGGCACT 87929 36 100.0 30 .................................... AGATTCATGGGATACAAATTACCCTTATTG 87995 36 100.0 30 .................................... TATATGTTTTGCCGATGTTGTCAGATACAG 88061 36 100.0 30 .................................... TCAACACTTAAGAGCTTGTCATCATTTAAG 88127 36 100.0 30 .................................... GGAACGCTTTGCAAAGATTGGTCTTTATCG 88193 36 100.0 30 .................................... AAGCTTGTAACGACGCAAAAGCTATACGTG 88259 36 100.0 30 .................................... ATGCCGACAAAACAATTCCGTGACGACCTC 88325 36 100.0 29 .................................... TTATACTTTTAGACCAGCCAATAAAATAC 88390 36 100.0 30 .................................... AACGTCATATTTTGGCGGTCTGTTCATCAC 88456 36 100.0 30 .................................... GGTATTGGTGGTCTAATGCTTCAAGTAAAT 88522 36 100.0 30 .................................... TGGTAAATTGCTAGATTTAACAAGTATGGT 88588 36 100.0 29 .................................... TAACTTGTCATTTCTACCACCTTCATCAC 88653 36 100.0 30 .................................... CTTTAGCCATTTGTACATACCACGAGCTGC 88719 36 100.0 30 .................................... ATTTACGCTCTAAGAACGCAAAGAGGAGAG 88785 36 100.0 30 .................................... AAATCAAGTTGAGCAATTCTACCTGATACG 88851 36 100.0 30 .................................... TTTTAAACAGTTCATCGATAACCCGACACA 88917 36 100.0 31 .................................... TCCATACCTGGAATTGAGAACTTACCTTTAA 88984 36 100.0 30 .................................... AAAAAAAGCTAATGGATTTTTATGATGCAT 89050 36 100.0 30 .................................... CTACTTTCGCTTTGGTAGAAACCCCCGTCT 89116 36 100.0 30 .................................... TACGGCTCATGATCTCCTAAAATTGAGACA 89182 36 100.0 30 .................................... TGTTTGATTTGAAGACTGGAGATGGAAAAG 89248 36 100.0 30 .................................... GCAAGTCGACACTCAGCAACAAGAAGAAGT 89314 36 100.0 30 .................................... ATAATACCCGAGCGGTTTTTTGATCATGCT 89380 36 100.0 30 .................................... TGCAAGAGACTTGCATAAAGGACTAGAAGT 89446 36 100.0 30 .................................... GATAGCAAAGACAAGCAACTAATGCAATAT 89512 36 100.0 30 .................................... GTATTTTAGAATACCCAAACGGCGCTTACT 89578 36 100.0 30 .................................... ATTGCTTCCGCGACAAATAACGTTGATATT 89644 36 100.0 30 .................................... GTTGCATAATCATATGTCGCTCCACCGACA 89710 36 100.0 30 .................................... ATGACATTGACAGGTGACACGTTAACCATC 89776 36 100.0 31 .................................... CTATCTTGTATCTATGAGAACGATCTTTACG 89843 36 100.0 29 .................................... TAAAAGCAGTCGAATCTATCAGTAAGTCG 89908 36 100.0 30 .................................... AGGTTCGTGGGGATGTTACGCTAACTTACG 89974 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 37 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : TAAGAATTTAGATGACTATCTAAGTCATAAACAATTTATTGAGATATGTCAGTTTTTAAACGATCTGTGTCAAAAATATTCTCATTTTTTCTGTATGGTATTTCCTTCAAATGAAAGTTATTTATACGTAACAAAAGAGAATACGGAATATATTAATATTATCTCAAATCAAATTGAATCCTTTTACGAATTTGACTTTATGTACGAAAGATTTTGTCAATCTTATCCGACTAATGACTATCCAAACGAAGACCAATTCTTAAAATTATTACAAAGAAATGGAAGTTATTTATTTAGTGAAGAAATAGGCCATTTTAGTTTGTCTGTAAGAGATATGGTAACTATCAAAATTTTAAACACGCTTTATCATTTTAATAATAAAGTAACTTTTGAAATTCCACATGTGAATTCGATGGAAATCAAATACCTAATTAATAATGATTGACTTTAAATCAGCCTCGAATTATAATCAAAAAGGGAGTATAAAAATTTAATTTGAG # Right flank : GAAAAATTTGGGGCGTAGATAAACCTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 535-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADFBD010000001.1 Streptococcus uberis strain GCPRG120 Contig_1_3702.05_Circ, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 534 36 100.0 30 .................................... AAGTGTTTTTTGTAACTGATTGACAGACTA 468 36 100.0 30 .................................... AAGTGTTTTTTGTAACTGATTGACAGACTA 402 36 100.0 30 .................................... ATGGCATCAGTACCGCCGCCCAAGGTATAG 336 36 100.0 30 .................................... AAATCCTCTACACCGTCACACTCGAAAATG 270 36 100.0 30 .................................... CAGACGCTTCTAGTTATGATAGACAAACAG 204 36 100.0 30 .................................... TATGCATATTCTAGCTATTTAGCTTAAGAA 138 36 100.0 30 .................................... GCATGGTGTGCTTCATCAACAACAATCGTG 72 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Left flank : GTACTCTCAAGATTTAAGTAACTATAAAACTATTTGCCATTTATCCTCCTTTCTATCCGC # Right flank : CTGCATAATCATATGTAGCCCCACCAACTCTGTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //