Array 1 94634-96430 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNF01000008.1 Salmonella enterica strain BCW_1585 NODE_8_length_222681_cov_3.06301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94634 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 94695 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 94756 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 94817 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 94878 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 94939 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 95000 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 95061 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 95122 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 95183 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 95244 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 95305 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 95366 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 95427 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 95488 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 95549 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 95610 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 95671 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 95732 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 95793 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 95854 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 95915 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 95976 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 96037 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 96098 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 96159 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 96220 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 96281 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 96342 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 96403 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113112-114607 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXNF01000008.1 Salmonella enterica strain BCW_1585 NODE_8_length_222681_cov_3.06301, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 113112 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 113173 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 113234 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 113295 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 113356 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 113417 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 113478 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 113539 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 113600 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 113661 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 113722 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 113783 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 113844 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 113905 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 113966 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 114027 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 114088 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 114149 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 114211 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 114273 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 114334 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 114395 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 114456 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 114517 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 114578 29 100.0 0 ............................. | A [114605] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //