Array 1 27966-27037 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QZHS01000001.1 Moraxella catarrhalis strain COPD_M34 NODE_1_length_312484_cov_22.2401, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================	==================================	==================
     27965	    28	 100.0	    32	............................	ATGGGCGGAGACGGTGGTGGTCTTGATGATTT  	
     27905	    28	 100.0	    32	............................	AACCCCAATTTGGGGGCAAGTGTGGACATGGA  	
     27845	    28	 100.0	    32	............................	CATCGAATCGCAAAAACTCACTGTTGATCAAG  	
     27785	    28	 100.0	    32	............................	ATATCGCTAAAATCTGTGCCAAGCGTATCATA  	
     27725	    28	 100.0	    32	............................	GATAAGCTGTACGGGCTAAGCGATACCACTGT  	
     27665	    28	 100.0	    34	............................	CGCCAAAAAGCCACGCATTCGCCAGTTCCTTGCC	
     27603	    28	 100.0	    32	............................	ACTGTCAATATAAGCCTGCGGAAATTCATAAA  	
     27543	    28	 100.0	    32	............................	GCCGATGGCTTCTTGGAGCATGGCAGCCGCCC  	
     27483	    28	 100.0	    32	............................	ATCGGATTATGTTGTTCCAGTTTCAAAATATC  	
     27423	    28	 100.0	    32	............................	AAAATTATTACAAGATTTTTGGAAGTTAGCTT  	
     27363	    28	 100.0	    32	............................	AAGAATAATCAGTTTTAGCTAAGTCAAACAGA  	
     27303	    28	 100.0	    32	............................	AATGGGCGGTCAGCTCAGGCGTAAACACAGCA  	
     27243	    28	 100.0	    31	............................	ACCGAGCGTAACCGCATTACCGCGCCATCTT   	
     27184	    28	 100.0	    32	............................	TGAGTTGTACGCATAAAATGCCGTTTTGCTGT  	
     27124	    28	 100.0	    32	............................	ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA  	
     27064	    28	 100.0	     0	............................	|                                 	
==========	======	======	======	============================	==================================	==================
        16	    28	 100.0	    32	CTTCACGACCGCACAGGTCGCTTAGAAA	                                  	       

# Left flank :   TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTCAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT
# Right flank :  TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCTGCGCGTGCCAATGCCGAAAGCTATAACGCCCAACGCCGCATGGAACAAGAAACCGACAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAACCTAGAGCGTGCCATTAAAGATGCTGAAGAGACAGGTGCAGATGACGCATCACTTGAAGGTATTCGCCTAACACATAAAGTACTGCTTAGCGTTCTTGAAAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACAT

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CTTCACGACCGCACAGGTCGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-7.10,-7.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.51   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
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