Array 1 333214-332210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINCK010000022.1 Escherichia coli strain C1-1 c_000000000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 333213 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 333152 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 333091 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 333030 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 332969 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 332908 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 332847 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 332786 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 332725 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 332664 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 332603 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 332542 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 332481 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 332420 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 332360 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 332299 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 332238 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 350391-348715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINCK010000022.1 Escherichia coli strain C1-1 c_000000000022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 350390 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 350329 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 350268 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 350207 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 350146 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 350085 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 350024 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 349963 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 349902 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 349841 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 349780 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 349719 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 349658 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 349597 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 349536 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 349475 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 349414 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 349353 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 349292 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 349231 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 349170 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 349109 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 349048 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 348987 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 348926 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 348865 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 348804 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 348743 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //