Array 1 523845-524521 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134397.1 Listeria monocytogenes strain NCTC7973 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 523845 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 523910 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 523975 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 524039 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 524105 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 524168 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 524232 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 524297 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 524361 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 524427 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [524450] 524493 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 95.3 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2644870-2642785 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134397.1 Listeria monocytogenes strain NCTC7973 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2644869 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 2644803 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 2644737 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 2644671 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 2644605 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 2644538 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 2644472 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 2644406 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 2644340 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 2644274 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 2644208 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 2644142 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 2644076 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 2644010 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 2643944 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 2643878 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 2643812 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 2643746 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 2643680 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 2643614 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 2643548 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2643482 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2643415 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2643349 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2643283 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2643217 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 2643151 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 2643084 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 2643018 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 2642952 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 2642886 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 2642820 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //