Array 1 40-1142 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSEM01000006.1 Lachnospira eligens strain AM48-8 AM48-8.Scaf6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 40 36 100.0 34 .................................... AAGAACTTCTTAATTATTCCTTTAAACATAACAC 110 36 100.0 35 .................................... GCGTTTAAAGCGTGGTGGTCAAACATGTTCCAAAA 181 36 100.0 37 .................................... TAGCGTTTACAAGGTGAAAAATATTAATGTCCTCATA 254 36 94.4 35 TA.................................. CTAAGGTACACCCACATATAACAAGGATAAATCTT 325 36 100.0 33 .................................... AAATCATTTAATTGTTTTGTTGCAGTTGGTTTT 394 36 100.0 36 .................................... TCATAATGTTCCCACTGCATTAATTCATACAATCCC 466 36 100.0 36 .................................... TTTTCAACTGGTGCGATTGTTGTTACTGGTGCAACT 538 36 100.0 33 .................................... ACTGTTAAGGTTGCCGTGAGTAGTTTTCTCTTT 607 36 100.0 39 .................................... TTGCTTCTGTAAGGCAATCAATGGACATGTTCCACTCTA 682 36 100.0 38 .................................... CAGTCTCGATTGATTGCATTACGCTGTTCCCGTTAACT 756 34 91.7 34 ...................T--.............. TCTTTCTCAACTACTCCTGCTAATGTGATATTGT 824 36 100.0 34 .................................... CCATTATCAGTCCTCTTTGCCTTAAATAAATATC 894 36 97.2 34 ...............................T.... CATACTTGCTTGTTACTATCGGAAAATTCATCTT 964 36 100.0 35 .................................... TGACTAGAAAGTTGGTAGCTGGCTAGTCAAGCATT 1035 36 94.4 36 ..................T........A........ ACCCTTGTCTCAATCTCATTGTCACTTATCTTCTTA 1107 36 94.4 0 ..................T................A | ========== ====== ====== ====== ==================================== ======================================= ================== 16 36 98.3 35 ATAAGAAATTAGATAACCCCTGATGGGGACGGAAAC # Left flank : ACTTGCCTTGAGTGAGACAATCAAATTTCATGTTTAATTA # Right flank : AGCAGTTGGTTTTGTTGTTGTATAAATGCCAATTTATTTAATGTAGTTAATAACTAACCAGAAAGGGGAAATCTATGAGTTACCTTTATGTTAATGATGATGGTGTGGTAATAAGCATCGAGGGGAACAGGTGCGTGGCTAAGTATAAAGATGGTATGAAACAGTATCTGCCTATTGAGTCATTAGAAGGAATTGTGATTATGGGGCGTTCCCAATTAACAACTAATTGTATGGAACAGTGCCTTCTGCAAGGAATTAATGTATCTTTCTTTTCAAAAGGTGGTAAGTATTTTGGAAGATTACATTCCACAGGGCATGTTAAGACGGAAAGACAGAGACAACAATGTATTCTATATGATACAGATTTTGCGTTGCAATTATCTAAAAGAATTATATCAGCCAAGATTAAGAATCAGGAAGTTGTATTAAGAAGATATGAGAGAAACAGTAATGTTGTATTGAAAGATATACATAATATGATGTCTATATGCAGAAGTAAG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAATTAGATAACCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 134193-136329 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSEM01000001.1 Lachnospira eligens strain AM48-8 AM48-8.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================================================================================== ================== 134193 30 100.0 34 .............................. CACATTCGCCAAAGTGCTTTTTTAGCGAAGTCAC C [134222] 134258 30 100.0 36 .............................. GAGCATAGAAAACAACTGATCAACGAATACAGCTGC 134324 30 100.0 36 .............................. ATCAACACTTTACCCCTAAAACAAGAAGATGTTAAG 134390 30 100.0 35 .............................. TATTAGGCGCTGGTATTGTAGTAGCCTTTGGAATC G [134418] 134456 30 100.0 37 .............................. GACATAGAACTACTCGGCGCGCTAGTGACAATGTATA 134523 30 100.0 37 .............................. TACATAAGTCAAAAACCAATGGCAATCGGCAGCGGTG 134590 30 100.0 37 .............................. GATGATGAATTGCTTGATGAAGCATTCAACGAATATG 134657 30 100.0 35 .............................. GCAGATATGCCAGCTGGCTGGACATCTGGAAACTA 134722 30 100.0 34 .............................. ATGTGTCAACGAAACTAAACAACATGAAATCCGC 134786 30 100.0 36 .............................. TGTGATTACATAGAAAAAATTTCTGATATTGGAACA 134852 30 100.0 35 .............................. CCAAGTAGAAAAGTAGTCTATTGTATATTCTATCT 134917 30 100.0 38 .............................. TGTACCATTAAATTAGCAGAACAGATGTTGGATTGCTT 134985 30 100.0 36 .............................. TTATTAACATAAAACAAGTTATCAATGCCGCTATGT 135051 30 100.0 35 .............................. CAAAATATTTGACGTGTGCGTAATTAACACAACAA 135116 30 100.0 36 .............................. AAACAAAACGCTCCTACGGGTGCAAGACATTGGCGT 135182 30 100.0 37 .............................. ACCTTTTGGACTGTTGGCAGTCTGTAGGTGGAATCTG 135249 30 100.0 101 .............................. ATTATAAGTGTTTGTAGGTGGTTGTTTCCTTGGGTGTTGATGTTTCCTCCGCTGCTAGATGTAAATATTATAAGTGTTTGTAGGTGTATATTGAAAACATA 135380 30 100.0 35 .............................. TACTTCATTAAGGTATACTGTTTTTCTTCCTATTA 135445 30 100.0 38 .............................. TACACAGCAAATATCCGCTATTATTAACGCTTCTATTA 135513 30 96.7 36 ................A............. AGTACCTGTAAGACGTTCAAATCATGTTCATAATTT 135579 30 96.7 36 ................A............. ATGCATCATCAGGTACAGCACAGCAGACAAGTCCGG 135645 30 96.7 34 ................A............. TTGTTATTCCTTCCTTCAGGTTGCTTGCCTGACG 135709 30 96.7 35 ................A............. CAAGATATGTATAAAACAATATACAGTACACCAGA 135774 30 96.7 35 ................A............. TAGCACAGGAATTGTGGAATTTTGTTATGGGAATA 135840 30 96.7 36 ................A............. ATGCAAAAAGCACGGTTTTATGATAGAATGGTGTTT 135906 30 93.3 36 ................A....A........ TCGCATGGAGCAACCCCAGAGTAATAACGAAACTAA A [135907] 135973 30 93.3 36 A...............A............. TTCTTATCAAAACGCTGCGTCGCGGGTTCATATCTG 136039 30 90.0 33 A...............A....A........ TTGCGCCTTTTTCCCTTGTGCGTTAATCTCCTA 136102 30 96.7 33 ................A............. AACAATGAATATGAAAATGATTACATATCTCTT A [136103] 136166 30 96.7 36 ................A............. TGACTTGAAACCTGCTACAAGTGAAGCCTGCGGATT A [136167] 136233 30 96.7 37 ................A............. ACTTGGAAGCAACAAGAAAAGACTGCTGAAAGTCAAA 136300 30 93.3 0 ................A....A........ | ========== ====== ====== ====== ============================== ===================================================================================================== ================== 32 30 98.1 38 GAATTAATAGATACATGGTGGGATGTAAAT # Left flank : AAAGCATTTAATAGGTGAGAAAGAATATGAAGGGTTTAGAATATGGTGGTAGTATATGTATATTGTACTTGTATATGATGTTAGTAAAGATGAAAATGGGCAAAAGAGATGGTCACATATTTTCAAAATCTGCAAAAAGTATCTGACGCATATTCAGAATTCTGTCTTTGAAGGAGAAATATCAACAGTTCAATTAGAAAAATTACGACGTGAGTTGAAACCACATGTTAATACTAATCTGGATTCAGTCATTTTATTCAAAAGCAGGAGTGAAAAATGGCTGGATAAAGAATTTTGGGGTAAGGAAGATGATTTGACGAGTTTCATAATTTGATTGTCGACCAGAAATAGTGTAAAATATGCACAGAGTCGACAATGGCGATATTGCTATGCTTCTGGCATATTCAGGGCATAAAGTATTAGTAATCTGTTGGCGGATTTAAAGGGTAGACAGAATAACGCTTCAGAGTTGAGAAACAGAGAGGCTTTAATAATTACGG # Right flank : TCTGCGAATAGGTGTAATTTCAAGAGAAATGTTTTTCATCGTTATTCTGTTGCACTGGTGCAACTTTGAATTATTCTACTATGCACAAATCTTCTGCAAGCATATCTGCCTAAGATTTTGCTCTTGCATAATTCTTCATTTCTAAATCCTCACTTTCTTAAAATTGGGTATAAAAATACCACTTGACCGGTGGTATTTTACTAATCAATATGCTTTATTTCCTTAATGGATCGATTTTCTTTAAGTACTCCTGCTTCTTTGAGTATCTTTTCAAAATCTTTATCATATCTCTCTTTGTCTTCCTTTGTTCTTTTAACAATTTCTCCTGTTGTTTCAAATAATGGTATCTCCTTTTTTAACTCTTCACTCATTATATTCCTCCAACAAGATATAATATTTATCATCAACCTTTCTTTATTAAGTACTTTGAATCTCTGATTTGTCTTATATAAAACTTCCTGCTCCTGTGCATTAACAGAAGAAATATCTCTACCATTATG # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.17, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGATACATGGTGGGATGTAAAT # Alternate repeat : GAATTAATAGATACATAGTGGGATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 137853-138802 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSEM01000001.1 Lachnospira eligens strain AM48-8 AM48-8.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 137853 30 96.7 35 .........................C.... TTTGAAAATGCTGTTGTTTTCACTGCTGGAGTAGC 137918 30 100.0 35 .............................. TGGATATATTTGAACTTGTTGACACTATCGAAAGC 137983 30 100.0 35 .............................. CGCTTATATAACTGCTCAAATATCATCATCTGATA 138048 30 100.0 35 .............................. GTGAAAACAGCCTAAAAGGGCATAGGATGTCCCCG 138113 30 100.0 35 .............................. ATATACTTTTGGTGTAGGTTCATATTGTGAAAACG 138178 30 100.0 35 .............................. ACAATAAATCCGCCAATAGGAGCGCAAGTTCTAAC 138243 30 100.0 36 .............................. TAGTGATTGCCATGAGTGAGAGACCGATAGGAAGAA 138309 30 100.0 36 .............................. ATAATGCAGATTACGCACGAATGTGACGGCGGCTTA 138375 30 100.0 36 .............................. GCAACATACAATCTTTCTAAATCTTTAGTATATGCC 138441 30 100.0 37 .............................. AGCCGGTAGAAGAGAATGCGGAAGAAGAGCAGATACC 138508 30 100.0 36 .............................. AAAGAGCAGAAAGTACACGAGCTTAAGTTAGCTGCT 138574 30 100.0 36 .............................. TGGACTGACGAAAAAGGAAAGAAGCATGAGGGTAAT 138640 30 100.0 37 .............................. AGGCTTGCACACGGCGGTATTATCGGAAACGGCGGCG 138707 30 96.7 36 .....................A........ GAACTGCGGATATAAGATGTTCTTCCAGCAAGCAGG 138773 30 90.0 0 .....................A..A....A | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 98.9 36 GAATTAATAGTTACATAGTGGGATGTAAAT # Left flank : AGAAAATATAGTAGTAAATAGACAGAACAATGATATATTTAAAAGATAAAATTAAAAGAATATGACTTACAAATTAGACAATCTGAGGAATTGAAAATATTTTTGAGATGAAAAAGATTTATTTAATATGGAATCTGATAGCAAAGTTTTGAATGCCTTAAACAATATAAAAACATTTTAGACGTACTTATGAAATTATTCTCAAGGGTAAAAATATCGCTGTTTTTACAATTAGCAATGGCATTGATTTGACATCGACTTATGTATTTTGTGAATTGTGGGAATAGCAAGAAAAGTTATAAGTGAAAAATGATAAAGATATATTTGAAATTGCTTGTCGACCTATTATAGTGTAAAATATAAGCAAGGTCGACAAAGGCTTAATTTATGCGTTTAATTTGAATTTATTGAAAATGACATTAGTAATATATGTGAGATTTTATTAGAACGACAAATAACAGCTTTAGATTAGAGGTTTAAAGATGTATATAAAATTACGG # Right flank : ATACGATACAATTATATGTTTGATTTTCTTGAAGATAGGATATGTTATTAAACAAAATAGTGGCTTTAAATTATGCGCTTTTGACAGGATCAATATGATTGATAAATGCAATCCCCTCCACGCAACCAACGCCACCACAATTCCCACTTTTCTGACAACTACAATTGGTGGAATCGACATTTTACAAGGATTATAATACATACATAACAACAGAAAGGACTGACATTATGCTACAGGAGAATCTTATTATGCTGAGGTCGCTTGCGGGTAAGACGCAGGAGGATATCGCAGAGGTTATTGGAATATCGAGGCAGGCGTATGCCAAATGGGAGCGTGGTGAAACAATTCCTGATATTGAAAAATGCGGCAGACTTGCAGAATTTTATGGCGTGACGATGGATTCCTTAATAAAGGACGATGTGCAGCTTGAAGGGCAGAAGATGGCACCAGCACCGAAAGGCAAACACATGTGGGGCGTTGTCACAGTGAATGACCGCGGT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGTTACATAGTGGGATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 434210-434602 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSEM01000001.1 Lachnospira eligens strain AM48-8 AM48-8.Scaf1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 434210 36 100.0 35 .................................... ACTCAACAGTTGTGTAGTCATCTTCGATATAATCG 434281 36 100.0 36 .................................... TAATATTGAAAACTGCCTTAATATGTAAGTTCTCTT 434353 36 100.0 36 .................................... CTTTTATCATAATATTATTCCTTTCTCTTCGTCAAG 434425 36 100.0 35 .................................... AATTGCTAAAAATCTGTAGCTCCATAAACATTCCT 434496 36 100.0 36 .................................... AAGTCACATCTAAGACCTAGCAGGTTACAGGCTTTA 434568 35 97.2 0 ................-................... | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 99.5 36 ATAAGAAATTAGATAACCCCTGATGGGGACGGAAAC # Left flank : TCCAACTGATATATATAATGCTGTAAATGATTTTGCAGATTGTTATAATAAATGCTTCATAAGTTCATTTAAGAATGCTGAAAAACTTCAGAATGATTATGTTATTCTTGGAGGTGGAAGTGGATATGTTTCCAAAACAATAATGTATCCGTTGTATGGTGAAAAAGCAGGTGTGCGGAATGTTCATGAAGTGTTAATGAGAACTGTTGCCAAAGAAAGAAATGGTAATCATAAGAACCAAAAAGATTTATCAGAAGGAATAGCACCACATATTATCAAGTACACAAGATGTAATGGACACACATTACAGATGGGGGTGTGTAAATTGACTATTAGCTGATTATCAATTATATTTTTAAAATGTATTTTGCACCGCACTGGTTATTTACTGGCGTTATAGACATTGTGATATAAAATTTATGATTGTATTATAAGATGATGAATTTTGCACCGCAAAGTAGATAATCAGGGTGCATGAATACTAGAGTTACAGAGACGGG # Right flank : TTGCCTGAGTGAGACAATCAAATTTC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAATTAGATAACCCCTGATGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //