Array 1 35675-36553 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_ALQG01000092.1 Streptococcus agalactiae FSL S3-170 ctg7180000007821, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     35675	    36	 100.0	    30	....................................	CGATGCTTTGTAATCGTCTCAACACCTGTT	
     35741	    36	 100.0	    30	....................................	CCGATGGGAAACATGCAGATTGGATTACCT	
     35807	    36	 100.0	    30	....................................	AATGAATTGTTCTACTCCATTAAACGGGAT	
     35873	    36	  97.2	    30	A...................................	CAAATCCCGCAGAGGGCGGTAGTTTTTAAT	
     35939	    36	 100.0	    30	....................................	GGTGAAGATTTTATATCAAATAAAGCTAAA	
     36005	    36	 100.0	    30	....................................	CTTTTTCCCAACCAAACCTAGCAATAAGAA	
     36071	    36	 100.0	    30	....................................	CATTTGATGCGTCAGAAGTGGCAATGCTAG	
     36137	    36	 100.0	    30	....................................	ATGAAAACCAAGAACCTGTTGTATCAGCGA	
     36203	    36	 100.0	    30	....................................	TTCTGCAAAAGATTTATCGTTAAACTCTGC	
     36269	    36	 100.0	    30	....................................	ATGTTTTTAAGAAATGTTCGTCTATTAAGC	
     36335	    36	  97.2	    30	..............T.....................	CATAAAATCTAAAAAAGAACTGTCTAATTT	
     36401	    36	 100.0	    30	....................................	CTTTTTCCCAACCAAACCTAGCAATAAGAA	
     36467	    36	 100.0	    16	....................................	CATGTTTTTAATTAAG              	Deletion [36519]
     36519	    35	  97.2	     0	..............-.....................	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.4	    29	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  ATATCTG

# Questionable array : NO	 Score: 6.13
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [56.7-8.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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