Array 1 19552-19933 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000056.1 Rhodobacter capsulatus strain SP108 NODE_56_length_79408_cov_39.530048, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 19552 37 100.0 31 ..................................... CCCATGACACACATGGTGTCCTCCTTAACAA 19620 37 97.3 30 ....A................................ TGGGGTAGGAACCTCCCTGCTTCTCATTGA 19687 37 100.0 30 ..................................... CAGTGCAGCCGCTCGGCTGCTTCATCAAGC 19754 37 97.3 39 .......C............................. AGACCGAGCATGACGTTGGACATGGTAGTGCTCCCTTCC 19830 37 100.0 30 ..................................... CGGTGTTCGAGCGTCGCCGTCACCATTTCG 19897 37 75.7 0 C......C............G........GGAA..CG | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 95.1 32 GTCTGAGGCCCATGCCCGCATGAATGCGGATTGAGAC # Left flank : AGATGGCGCAATCGCAAAGCGATCTGACCGAATTCGCCACCCTGTTCCTGCCCGCAACCCTTGGCGCCGGGTTTGGCGGCATGAACTTTCTGGCCGGGCTCGATGTCAACGCGCAGGGTTCGGCCACCGCCATCACCGGCACGGCGGTGGCGCAGCTCTTCACCTGGGGGGGCATCGCCTATCTGCTGGCGGCGCTGGTGCTGGTCTGGTTGCCGCAGCGGGACGAGCGTCTGCCCGAGGCGCGGCGCAGGATTCTGGATCGTCTGCTGGGCGCGGCGGCGCTTTTGGGGCTGGCGGCTTTCGGGACATGGAAGCTGTTCGGATGAGCCCGGGCGCGCAAATCCCGGTTGGAAAAACGGCAACACCTTGGCCGGGAATGCATAATCGCGCCGGAAGTCGGAAAATTGTGGGTCCGGCCCCGGTTTTTGCGTCATTGGTCGGCTCATCGTTGGAAATATGGCTGCAAACTTTCTTCTTGACCAAGGGGCTCCAGAGGGCCA # Right flank : GGCGAAAACACCAAGGCCGGGCGCGTCACCCAGCGCCCGGCCTTGCCATGTTCGGGGCAGGGGCGTGCTCAGCCCGGTTTGGCCAGCTGCAGGTCGTAGCGCCCCGCGCCCTTGCTTGTGTGCGAGCCGATATGGGTGGTGGCGCCGAAATGCAGCATCGACAGATCGAGCGGCGCCGGATCGGCCAGCACCAGCCGCCCCAGCACCCCGCCACCCGGCACCACCCGCCCCTGTCGCCGCGAGCCGCTGGCCCAGGGCGCCGGTTCGACCGCCTGCCAGATCCCCTCGGGGCTGGTCTCGGGACGGATCAGGCAGGGGGTTGCGCCGTGCCACAGCGCCATCGCCGCGCTGCGCCGCCAGGCCGCCTCGATCACCGTGGCGGGCTCGGCGTGGCGGTGATCGCCCGCGCGCAGCGACAGCGGGGTCAGAAAGTCAAGCGCGGCCATCCGCACCGGCCCCTCATGCGCGGGCAGGCCCTCGGCGCGGCCAAGGCCGAGATC # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGGCCCATGCCCGCATGAATGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 27953-27513 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000056.1 Rhodobacter capsulatus strain SP108 NODE_56_length_79408_cov_39.530048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 27952 37 100.0 30 ..................................... CTTGCCAGCAACGGAGGCGCCGGCTCTTAC 27885 37 100.0 30 ..................................... GCAGCGACGACAACGAACGACAGCCCCTCC 27818 37 100.0 30 ..................................... TAGCAACCGGTCGCTCGGCTGATTTACTGT 27751 37 100.0 29 ..................................... TCGAATGGGCCATTTACTGGCTCCTCTTC 27685 37 100.0 29 ..................................... GTGTCGCCCTCCTTGGGCGGTGAAGCGGA 27619 37 100.0 33 ..................................... CCGCCATCACAGCGGCTGGGTAGTTCGGATTGG 27549 37 89.2 0 ................................TG.CG | ========== ====== ====== ====== ===================================== ================================= ================== 7 37 98.5 30 GTGGCACGACCACGCCCGCATGAATGCGGATTGAGAC # Left flank : CGATAGCCAAAGCTGGCGTCGGAAAATTCGCGCTCGAAGATCGGCGAGAGCGCCTGCGCGACGGCGGTTTGCGCGATGCGATCGAGGATGGCGGGAATCGCCAGCGGTCGGCTGCCGCCGTCGGGTTTGGCGATGTCGAGGCGGCGCAGCGGCGCGGGGTGGTAGATCCCGGCCCGCAAGGCCGCCGAAAGGGCCGACAGCCGCGCCGCAGCGGCTTGCGCGAAATCGTCGAGCGTGACACCGTCGCCCCCGGCACCGCCGCCATTGGCGCGCACCTTGGCCCAGGCCCGATCGAGGGCCTCCCAGGTGGTGATCCGCTCGAACAGGGTGTCAGACAGGGAAACCTCGTTGGAAAATGTGCAGCGCTCTGGAATGTAACAGAAAATCGGATCATGAAACAGAAAATCGGTGGTTTCGGGGCCGTTTTGCCCCTGCGGCGGTGAGGATGGTTGGAAGTGCCACTTTTTCCTTGATTTCCGGGCGCGGATTGCAGAGGGTGT # Right flank : CTAGAAATGTGAGCGTTGAAACGCTTCAGAGCCGGAGTTGCCTCCGGCTCTGATGCGTTTCGGTGGCAAGGGCCGGTCCTGGCTCAGCCGTCCGGGCCGAGCATCCGGGGTTTGGGCGAGGTGCGGGCGTGATCGCGCAGCTTGCGGTGCAGCTGAAGCGGCAGATAGCTCAGCTGCCCGGCCCGATCGAGATCGCGGCCGCGGGCCGGATCGGCATGGGCCAGAAGCGCGCGGACGGTGTCGCTCTCGCGCCAGCCCTCGCCCATGAAAGTTTCGAAATCGCGCATCCGTGCGGCGCAAAAGGCCTCGGCCTCGGGCCTCTCCTCGTCGCCGTGGCGCAGCTGCACCGCAACCGGGGTCAGGCGCGCCTGCCCGGCCCCGGCGGCCTTGGCGCGACCGATCATGTGGCGCAACTGCGGCGCGCCGCCAAAGGTCATCGCCCAGACAAGCGCCCCCAGTTCGACCGGGGTGACATTGTGAAAACGGATCTCGGCGGCGAA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACGACCACGCCCGCATGAATGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 30268-30097 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000056.1 Rhodobacter capsulatus strain SP108 NODE_56_length_79408_cov_39.530048, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 30267 34 97.1 35 .G................................ TGAGACCTTGGGCCATTTTGGCCTCCTTCTGTATC 30198 34 100.0 34 .................................. TGAGACGTGGCGTTCAGGAACATCGAGAATTTCA 30130 34 97.1 0 ..G............................... | ========== ====== ====== ====== ================================== =================================== ================== 3 34 98.1 35 TAAGTGGCACGACCACGCCCGCATGAATGCGGAT # Left flank : CCTGTCAGCTTTCCGCACAAAGGGCCAGAGCCAGCGGGCCGTGTCGCGGCTCAGAACAGCCAGTGGTCGCCTTCGGGCTCCAGCGGCACGGCATCGCCATAGACCCGGCTGCTGGTCTCGCCGTCGGCGCCCAGAACATAGACCCGCAGGCTGTCGCCCGGGTCGAGCAGCGCCGCCACGCGCTGCGCCACCGCCTGGGCGCGGTTGCGCGACATCCGGGTTTCAAAGACCGATTTCTGCACCCGGCTGGCCGCCTCCTCAAGGATGGCTGCGGCTTTTCGTCTTTTGCGATTGGCGCCGATGTCGTAGGAAAAGACGGTCAGCATTTCGCCCCTGGCCATGCAATCCTCGTTGGAAAACCGCTAACAGGCCGCGATTATTATGGAAATCCGCTCGCAACGCAAGAAATCCGAAGGTTTTGCGGGTTCCGTCGGTCTTGGCGGTGCCGAGGGTTGGAAAAGCCAGTTTTTCCTTGATTTCCGCGCGCGGATTGCAGAGGG # Right flank : CGGAGCCATGATCTCCGCCAAAGGGATCCGGCTGCCGTGCTCCTGCGGGCGGCGGGGTGGGAGGGCGTGGCTCAGTAGTCCTGAACCTGCGGCTCGAAGCTGCCCTGGTCGGGGGCGCGGCAATGGCGGGCAAAGGCGCGGGCCTCTTCGCGCATGACCACGCGCAGCTTGTGCCGCGCGCCGCTGTGGTTCGAGCGCACGACCCGGTCAAGCGCGGCCTCATACCCCTCGATGATCGCGCGTTGCCCGGCCGGGGAAATGCGCGCACCATCTTCGGTGAAATGCTCGGGGCGCAGGACCTTGCGGTTGAACAGCGTCACCGCCACCCCCTCGGTCAGAAGGGCGCGGAACCCCTCCATCAGATCGTAGACGCACCCCTCGCCGCGATCGGTGCTGGCGTGCAGGACGCCGAAACCCGGATGCAGCCCCGCCGACAGGATCGCGGCGCGGATGTCGCGTTCCAGCAGAGCACAGAGGTAGTTGAGCACCGCGTTCAACGC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAAGTGGCACGACCACGCCCGCATGAATGCGGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.80,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 12216-11760 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000013.1 Rhodobacter capsulatus strain SP108 NODE_13_length_117044_cov_37.595749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 12215 37 100.0 33 ..................................... GCGTTGTGTCCCGCGAGGTGAGCGTCGTACTGG 12145 37 100.0 33 ..................................... GCAGCGGCGCCAGCGCCGCCTCCACTTCCTCCA 12075 37 100.0 31 ..................................... GCGGTCGTGGTGCCCAGATCGGTCCCGCCGC 12007 37 100.0 31 ..................................... TTATTGAGGGTTGCACTCATCTCGAGGACAT 11939 37 100.0 31 ..................................... TTTCTCTCCATTTCCGCCATGGCGGCATGAA 11871 37 100.0 38 ..................................... AACGCCCCCCATGCGGCAAAAATCACGCAGAGGAGAAA 11796 37 75.7 0 ....................TCGC.....GG.C..TA | ========== ====== ====== ====== ===================================== ====================================== ================== 7 37 96.5 33 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAGACCGAATATTGCACCCGCGTCGCGGCCCCTTCCAGGATCCGCGCCACCCGGCGCCGCTTGCGGTCTTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCGGATTTCGGGTCTCAGTCTGCCGCGAAACGGGGGGCGGCGAAAGCCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGAGGCTGGACAGGGGGAATTTCGCCTGTCAGGCTGATCTTGAAAGAGGGAAAATCGGGCAAAAGTGCCGATTCACCGTTGGAAAACCTGTCATGACCTTGAAAACCAAGGATAAAGGAGGAAAAACACGCGCAAAAACCGGGCTTGCAAGGGCTGTTTCGGCATGTCGGGCACATCACGGTTGGAAAGCGGACCAAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : GTCCTGCATCTGCGGCAGGTAGGGCATTGTTTCCGGGCTGCGGCAGTGGCGGGCGAGCGCGCGGGCCTCTTCGAGCATGATCCGGCGCAGGGCGTGGCGCTGTCCGGTCTGGCTCGAGCTGATCACCCGTTCCAGCGCCTCCTCGTAGCCGGTGATCAGCGCGCGCCGACCGGGGGTGAGGATGCGCAGGCTGTCGCCCTGCGGCTCGAACATCTCGGCGCGCAGGCGGCGGCGGTTGAAGAGGCTCACCGCCAGCCCCTCGGAGAGGGTGGCGCGGAACACCTCCATCAGGTCATAGACGGCGGCGTCGCCCCGGTCCTGCGCCTGATGCAGCACGCCAAAGCCGGGGTGCAGCCCCGCGCCGATCAGCGCCGCGCGGATGTCGCGGGCCAAAAGCGCGGTCAGGTAATTGATCGCGGCGTTGAGGGGCGTTTTCGCAGGACGTTCGCGCAGGAACGGCCCCTTGTGCGCGGTGCAGAGCCGCGCCAGCGCGGGCCAGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 13205-12883 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000013.1 Rhodobacter capsulatus strain SP108 NODE_13_length_117044_cov_37.595749, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 13204 37 100.0 33 ..................................... ACCGTAAACGGCCGCGTCGTTTCGGCGTTGCTG 13134 37 100.0 35 ..................................... TCGATGCCGACATTGGTCTTGATGACCTTGTGCGA 13062 37 100.0 33 ..................................... CCCTGCTCGGTGGTCACCACCACCATCCCCAGA 12992 37 94.6 36 ........G.......T.................... CCATTTAGCCACGGGCGCAGAATGTGCTCGTAGTTG 12919 37 81.1 0 ......................AGG.T......GC.T | ========== ====== ====== ====== ===================================== ==================================== ================== 5 37 95.1 34 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : CAGGCCTTTGGCGCGGCGATGCGCAAGACCGACCCGCAATGGCCCGACATCGCCCCGGTGCAGGAGCTGCTGGGTGCCGCCGATCCCAAGGGCAAGGGCCACGATCAGCGCGGCTACATGGGCCTTGGCCGCGAGGCGCCCAGCTACCCGGCGTTGCGAAAGACCGCCTATGACTCTGGCAAGGGCCATTCGGGTCCGGACTGTCTGCTCTCGCCGCCGCGGCGCAGTGCGAAAACCGGTCGCAAGGAGGGGTGAAGGCCGCGCTTTACAGCCCGGCACCGGGCTGTCACTCTTCTCCGGGACGAGCTTCTACGCCCGAAAACTGGCCGAAAATCGCGATTCGACGTTGGAAAGTAGATCATGTCTCTGAAGCAAAAGGAAAAAGGAGGAGAAAGACGCGTGAAAAACGGGCTTGCAAGGGCTGTTTCGGAGTGTCGGGCACATCACGGTTGGAAAGCGGACCCAAAAGCGCTTTCGGGTCTTGGGTTTGCAGAGGGTAA # Right flank : CGGTCTGTGCGGCATCTGTCCGGGGTCGGTCAGACCAGCCAGTAATTCCCCGGCGGCTCGATCGGGGCGGCGTCGCCGTAGGTGCGGGTGCGGGTTTCGCCGCTCGCGCCGATGGCATAGACGCGCAGGCTGTCGCCGGGGGCAAGTTCGGCCGCGACGCGTTGGGCCAGCGCCGCCGCGCGCTGCTCGCTCAGCCGCGCCTCGAAGACCGAATATTGCACCCGCGTCGCGGCCCCTTCCAGGATCCGCGCCACCCGGCGCCGCTTGCGGTCTTGCGACACGTCATAGGTGAAGACCATCAGCATCTCGGCGCGCGGCATGGCAGACCCTTTTCGGTGCGGATTTCGGGTCTCAGTCTGCCGCGAAACGGGGGGCGGCGAAAGCCCTTGCCGGGCGGGCGGCCCTGCGGCGGTCTGTCGTGGCGCGGGGCAATCTTGAGGCTGGACAGGGGGAATTTCGCCTGTCAGGCTGATCTTGAAAGAGGGAAAATCGGGCAAAAG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 21930-22312 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000013.1 Rhodobacter capsulatus strain SP108 NODE_13_length_117044_cov_37.595749, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 21930 37 100.0 34 ..................................... TCGGCGGCCTCCTCTTCCCAGTCGGCCATCATGG 22001 37 100.0 31 ..................................... ACCCATCCAGGGCTTTGGACACGAGCAGCGA 22069 37 100.0 32 ..................................... GCCCACTCGTAAACGGTGCTAAACGTCGTCAC 22138 37 100.0 31 ..................................... GCATAAGAGACTGATTTTCCGTAAAAATCGT 22206 37 97.3 33 ........G............................ TGCGGGGCCTCCCGCTGGCGGGCCTCGATTTCG 22276 37 81.1 0 ......................G.......ACCTCC. | ========== ====== ====== ====== ===================================== ================================== ================== 6 37 96.4 32 GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Left flank : TCCTGGGACAGATCGCCCCCGCCAGCCCCCGCACCGCCTGGCTTTGGGGTCTGGCAGAGCTGATGTTCTGGGCTGCCATCGCCTATGGCATCGGGCTTTTCGTGCAGGGGCTGATCCGGCGCAAGGGGATCGACAGCCCCGACAGCATCGGCCCGCTCTTGCGCCGCGCCGTCAGCTGGACGGGCTTTTGCGCCCTTGTCTGCGCACTTCTGGCGGTGGCGCTGAAAGGCTGAACGCCCCTGCGACGCCCTGTCCTGCGCGCGGGAATTTCGCGGCTGGACAGGGTCGTTTTCGCCTGCCAAGCTCTGGGTGTGGCGGTGAAAACGGCTCAAATCGGCGATTCAGCGTTGGAAATGCCGCCATGATCTTGAAGATAAAGGAAAAAGGAGCAAAAAGACAGCAAAACCGGGGCCTTCGGCGGCCTTTCGAGGGACAGGAGCACGGCAAGGTTGGAAAGCGGACCGAAAAGCGCTTTCGGGTCATGGGTTTGCAGAGGGTGA # Right flank : CTTGGGCGGCTTGCTGCGCCGAGGCTGCCGCCCTAACCCAAACTTTTCGCCAGCGCCTCGGCCTGTTTCAACACCGTCCGCACCGCGTCCGAGGCCAGGTCGGGGGGGTAGCCGAAGCGGGCGAGGATCTTTTTCACCTCGACCCGCATCCGGGCACGCACGTTTTCGCGTCGCCACCAGTCGGGCCCGGCGTTCGAGCGCACGATCCGCACCAGTTCCGCCGCGATCACCTGCAGTTTCTCGTTCGACATCACCTCGACCGCACTCTTGTTCTGCGCCAGCGCGTCGTAAAAGGCCCGCTCGTCCACGGTCAGCCCGTCCTCGGGTTCGTCGCGCAAATCCTTGGCGATCTCGATCAGTTCCTGGATCACCTGCACCGCATCGACGGCTCGGTTGTGATAACGCGCGATCGCCTGTTCGAGCCGCGCCCCGAATTCCTCCTGCTTGACCACGTTCGAGCGCGTCCGGGCCGAAATCTCGCCATTCAGCAGCTTCTTGAG # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCCAGACACCTCTCCCGCCAGTAAGCGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 60629-58892 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000016.1 Rhodobacter capsulatus strain SP108 NODE_16_length_85736_cov_38.720806, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60628 29 100.0 32 ............................. GCAAGCAGGGGGCTTGAATGAAATCGCCCAAA 60567 29 100.0 32 ............................. CGGATGTAGCCCCGCACGGCGCTGGGGATTGT 60506 29 100.0 32 ............................. GGTTGCGGCCGGACGGATCGAGGCGGCGAAAA 60445 29 100.0 32 ............................. TTGGTGACGGCTTGGGGGTCCCACTTGGGCAC 60384 29 100.0 32 ............................. TCGATCAGCTCGCGGCCGTCACCCACCGCCAC 60323 29 100.0 32 ............................. TACGAAGTCCGCGTCGTCGGGGCGCCGGTCGC 60262 29 96.6 32 ...................A......... TGTCCGAAAGCACCGCAAAGGTATCCTGAGCA 60201 29 100.0 32 ............................. ATCGGCAATATCGTGGCCGAGGTGCCGATGGC 60140 29 100.0 32 ............................. TTGTCCGAACGCATGTATTTGTTTGCCAGCGC 60079 29 100.0 32 ............................. CGATCCGGCCCGTATTCCTGCAATGGGGCTAC 60018 29 100.0 32 ............................. CGCAGGATCTCGCGTCAGAGGCATCGCAAGGC 59957 29 100.0 32 ............................. CGCGCGAGGTGCTGCTGGCGTGCCAGGAACGG 59896 29 100.0 32 ............................. TCCCCCGGCCGCGCCACCAGCCGCGACGGCGG 59835 29 100.0 32 ............................. AAGGCGGTGAAGGAAGTGTTCAATGGTTGACG 59774 29 100.0 32 ............................. GAGGACAGGCTGACGCAGATCCTGTTTTACTC 59713 29 100.0 32 ............................. GACGCAGGGGACACCGTCGCCGTCACCCTGTC 59652 29 100.0 32 ............................. AGAACGGGCTGTCGGCGTCGGCCCACCATTGA 59591 29 100.0 32 ............................. ATTGCCGATGAGCTGGGATTTACCCGGGGGAC 59530 29 100.0 32 ............................. CGCCGTGCCCGCCACGAGATGATCGTCGGGGC 59469 29 100.0 32 ............................. ATTCTCCCGTGGCCCTACTACACAGCCTCAAT 59408 29 100.0 32 ............................. ATCACAAAAGCGGAATCGGGATTCATCCGGTC 59347 29 100.0 32 ............................. GTCAGCCCCCCGCTTGCGTTCCGCCACGCTGT 59286 29 100.0 32 ............................. GCCCAGAAGATGGACGAGCTGACGCGCGTCAT 59225 29 100.0 32 ............................. CACCAGGGGCGGCGCGTAACCGCCCCGCAGCA 59164 29 100.0 32 ............................. TCGGAATTGCGATAGCCGCGCGCATAGGTCGA 59103 29 96.6 32 ............................T GATGCCGATGACGACACGCTTTCCCCCGATTT 59042 29 100.0 32 ............................. CCCGAGCTGTATCCTGCGGCCACGGCGCGGGC 58981 29 96.6 32 ............................T CATCTCCGGGCTTTCGCTTTCTTCGTGCACCA 58920 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GGTTCCCCCGCACCCGCGGGGATAGACCC # Left flank : CTGCGAAAATCGCCACCGACCGACCCGCGGAGAACATCGAACGCCTGACGCGCCGCCTGACCGGTGCCGCGCTCGCCAAGCAGGGCATCATTCCCGCAATGATCGAGCGCATTACCGCCCTTATCGAGGGGCGCAATCCCTGATGGCCCTGACCGTGATCATCACCCGCGATGTCGAGGCGCGGTATCGGGGGTTCCTGACCTCGGTCATGCTCGAAGTTGCCCCCGGTGTCTACGTTGCTCCCGAAATGACCGCGGGCGTGCGTGAAAGGGTCTGGTCGGTGATGCAGGACTGGTGGGAAACCCTGGGTAACGGGTCGCTCGTTCTGGTCTGGCGCGACACCAAGGCGGTTGGAAATCTTGGATTGCGGATGCTGGGAGAGCCCCCGAAGGAGATTGTCGACGCTGATGGGATTTTACTCGTTAAGCGAAAGTAATGCCCCGGAAGCTCGCCTCTGCGCTCTTTGACAATTGAATTGAATCATGGCCTTGCTTCGCAGA # Right flank : ATGTCACAGGCGAATTGCGCGCCTGCGGAAGGGTTCCCCCGCTCACGCCAATCCGCGCAGGATGTCCGCCGTGACAGGCAGTCTCTTCAGGCTGGCCGCGGGATCTGCACCAGCACGCCCGCACGGTAAAGCGCCACAACAGGGATCGGCGCGGCGATCAGGAAATTCAGATAATTGAGCGCCTGCGCGCTGACCCCCAGCGGCGGAAGCGGTTTGACACGCTCATCGCCAAAGGCCGGGGTAAGGAACGCCACCATCGCCGCGCCCCGGTTCTGCCGCCATTTCCAGACCTGACGATCGGAAAGCCCGGGCACGGGGTCGAATTTCAGAGCCTGAAGAATGTCGCCGCGGGTTTCCTCGACCCGATCGCCCAGAGCGACAGAAAGCCGTTCGAAACGGACAAAGTCGATGTCCCCGGTCTGCGCCCGCGCGTCGATATCGAAACGCCCCCCCAACTCGCCCTGATAGAGCGCGTAGGCGGCCGTGCCGACCAGAGTGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCACCCGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 4122-1225 **** Predicted by CRISPRDetect 2.4 *** >NZ_SWJZ01000156.1 Rhodobacter capsulatus strain SP108 NODE_202_length_36422_cov_39.800339, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4121 29 100.0 32 ............................. AGGTCACGGTCGCGGACCCGGCCGATTCCGGC 4060 29 100.0 32 ............................. TCGACACGCGGGAGTTTCCGAACACCGTGGCG 3999 29 100.0 32 ............................. TTTCCGAGCTGCGCGCCGCTTTCAGCGCGTTC 3938 29 100.0 32 ............................. CCGCCGCAACGACCTCGACGAGGCCTCTGGTA 3877 29 100.0 32 ............................. TGGGAGACGCCGTGACCAACTACGTCGGCGGC 3816 29 100.0 32 ............................. GGATCGAGTTCGACCTGATCGGGCGGCGCGTC 3755 29 100.0 32 ............................. ATGAGCCGGAAACCGAGCGCCAGCCCGAACAA 3694 29 100.0 32 ............................. ATCTAGCTTCTTCGGCATTTTTACTTGCGGCA 3633 29 100.0 32 ............................. GGGCCCCGCTTGCGATGGCGCGTGCGTTCCTG 3572 29 100.0 32 ............................. GTCGATGGCAACCCCTATGAGGCGCTTCCGGA 3511 29 100.0 32 ............................. GACAACGGCAATGGCTGCCCTGACCCAACCGC 3450 29 100.0 32 ............................. GCGACACCGCCCCGCAGCTGGTTGGGGAGGTG 3389 29 100.0 32 ............................. CCGTGTGCAAATTTTGCACACTAACCCTGTAA 3328 29 100.0 32 ............................. AAGGAAAGCCCCATCGTGGCCGCGGCCAAGAA 3267 29 100.0 32 ............................. CTGATCGCGCATCCGAAATGTCAGGAAGCCTA 3206 29 100.0 32 ............................. ACGCGGACAGCGACATGTTCGGATCGGTGAAC 3145 29 100.0 32 ............................. GTCTTCATCGTGATCGATGACGAGGACAAGAC 3084 29 100.0 32 ............................. CCGCGCCTCGTTGACTTCATCCTTGAAATAGC 3023 29 100.0 32 ............................. GTCCCGCCCTCGGCCGTCGCGGCCAGGCCGGC 2962 29 100.0 32 ............................. GCCATCGGCACTTCGGCGGCGGCGTTCAACGC 2901 29 100.0 32 ............................. ACATTTCACACCGGAGAATGTAAAATTACTCG 2840 29 100.0 32 ............................. CTTAAACCCTGCCTGCAGGCCCTGAAGATCCT 2779 29 100.0 32 ............................. GCGTCGCCCTCGCCCTGAACCGGCATGGACAC 2718 29 100.0 32 ............................. ATTTCCTCCGGGCAGGCGTCCGGGTCCCAGAC 2657 29 100.0 32 ............................. TCGAGGTCGAGGAATACGAGTTTGACGCCACG 2596 29 100.0 32 ............................. GCGTGGCGATATCATAGGCAGATCCGCCCGAG 2535 29 96.6 32 ............................A GCGATCAGCGCGCCTATTGCGCCACTGTCGCC 2474 29 100.0 32 ............................. GTCGCGTCGTGCAGCAGATCGAACTGCCGCGC 2413 29 100.0 32 ............................. TCACTGTGCCCACTCCGGCCGACAGGACGCGA 2352 29 100.0 32 ............................. GGTGGGCGTTGTGGTGTCCGACTGGTAGCGCA 2291 29 100.0 33 ............................. TGAGGATCCACCATGGCTGACAATTTCCAATAC 2229 29 100.0 32 ............................. GGGCGTCTGCTCCTGATCAAGATCGGCGATGG 2168 29 100.0 32 ............................. AATACGGAACCACGGAGCACCACGCCAACCCG 2107 29 100.0 32 ............................. CTGGCGCAGACCGGGCGGAATGTGCTGCCCGT 2046 29 100.0 32 ............................. TGCGCAACATCTGCGGCACGATGGGGCGCCTG 1985 29 100.0 32 ............................. GCGACGACCATTCCGCGGTCGGTGCAGCCGGT 1924 29 100.0 32 ............................. CTTCATCCCCGGCGCGCCTCCGCGATCAGGGC 1863 29 100.0 32 ............................. CGACACCTCGACCAGCAGGCCGAAGCCCAGAA 1802 29 100.0 32 ............................. GGTTTGTCTGGTCGCTGATCTGCGACGAGCTG 1741 29 100.0 32 ............................. CCGATGTAGCCCTGTGCGGCGCCAAACGGGTC 1680 29 100.0 32 ............................. CGCAGTGCTGCGCTTTGTCGTGACCGAGGAGC 1619 29 100.0 32 ............................. CTGACCCTGCTGCCGTCGCAGCCCTGGGGTGC 1558 29 100.0 32 ............................. ACGACCGCGATAGCATGGCTGAGGCGCTGTTC 1497 29 100.0 32 ............................. ATCCGGATGGGTGATCTCGATCAGCACCACAT 1436 29 100.0 32 ............................. CACACCGCCATCACATGGGCGCTGCAGGGCGG 1375 29 100.0 32 ............................. GCCGTGCGGCGCGGGAATGTCGAGCTGGCCCG 1314 29 100.0 32 ............................. ACGTTGAAGCCCATGAGAGGGGAGACAGATGC 1253 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================= ================== 48 29 99.9 32 CTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : CTTCTGGGTCGGATCATCCCTGCCATCGAAGAGGTTCTGAGCGCGGGCGAGATGCCCCGCCCGGAGCCGCCCCCCGAAGCGATGCCCGTGGCCTTTGATGAGGGCCAGTCGGGCGACGCGGGGCATCGCGGATGATCGTCGTGGTGATCTCGAACGCGCCTCCCCGGCTGCGCGGACGGCTGGCCGCCTGGCTGGTCGAGGTCCGCGCGGGCGTCTATGTCGGCGACTATTCCGCCAAAACCCGCGAGATGATCTGGGAACAGGTGCTGGCGGGGCTCGAGGCGGGCGACGCGGTGATGGTTTGGAAGGCACCCACCGATCAGGGCTACGACTTCCGCACCGCCGGCCGGAACCGCAGGATGCCGGTGGATTTCGACGGTTTGAAACTGGTGAGCTTCAAGCCGGACAGGTGAGGCCGATCCAAGGCGAAAATCTCGCAAGAATTCGGTGCGCTCTTTGACATTGTGAAAATCTTGGTGGATCAATGGTCTGCAGGAAGA # Right flank : CGGAATTTTTGCTACTCGGTCCCGCCCGACGCCATGGGCCCCGGCCTCGCCGATCCCTTCCAGCTCGGCGCGCACCTGGCGCCCGCCCTCCGCCACGAGGCGGACAGACACGCGTTTTTCAGCCATTGTGAGGCTCCTTGAAATTCGGGCGGGATTGTCTTACGTTTTGGCTATCGATCAGTCTGAGGTATGACCATGTCCGAGACCGCAACCCTGTCCTCGAAGTTCCAGATCTCGATCCCGAAGGCGATCCGGGCGGCGCAGAACTGGGATGCCGGGCTCACCTTCGCCTTTATCCCCAAGGGCAAGGGGGTGCTGCTGGTACCGGTCCCAAAGCGCGACGCATTGAAAGGCCTCGCGCGCGGGGCGTCCGCCACCGATTACCGTGACCGGGCAGACCGCTTCTGATGGTGCTCGTCGACACTTCCGCTTGGATCGAATGGCTGATCGGCTCTGCCACCGGTGACAAGGTGGCAGAGCATCTGCCCGAGCAGCAGGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCCTACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //