Array 1 3644-3018 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQTU01000045.1 Staphylococcus pseudintermedius strain ST64-3 AAH2_S39_L001_R1_001_contig_45, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      3643	    36	 100.0	    30	....................................	GCAGAAAAACCCTTTGTCAGTTATGGGAGC	
      3577	    36	 100.0	    29	....................................	GACAATTGCATCATCGTTGTCATCTGAAG 	
      3512	    36	 100.0	    29	....................................	CTTTCTAAAAAACGTTGATACGCTTCTTT 	
      3447	    36	 100.0	    29	....................................	CATTACCTTTGTTTGCGTTGTTTGATTCT 	
      3382	    36	  97.2	    30	............................A.......	ACATCTGAACCTACCGCGCTATCGCTTACT	
      3316	    36	 100.0	    29	....................................	GACAATTGCATCATCGTTGTCATCTGAAG 	
      3251	    36	  97.2	    29	............................A.......	GTTAACTGAACTCGAGTGTTGGCGCTTGA 	
      3186	    36	  97.2	    30	............................A.......	ACAGGCTTAAAGAATCATTACAGTTTGCTA	
      3120	    36	  97.2	    30	............................A.......	GTTATGATGTTTGGCGATATGGGTCGTCGT	
      3054	    35	  88.9	     0	..........................-.CA.C....	|                             	CT [3021]
==========	======	======	======	====================================	==============================	==================
        10	    36	  97.8	    30	GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC	                              	       

# Left flank :   TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTCACTAATCATCCTACTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGTGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCTAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG
# Right flank :  CTTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAAATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCACATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGC

# Questionable array : NO	 Score: 6.07
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC
# Alternate repeat :   GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,-0.20] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [6-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.91   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//