Array 1 77346-76475 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCT01000012.1 Cronobacter sakazakii strain MOD1_LR703 csakLR703_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 77345 28 100.0 32 ............................ TGATGCTTTGGAGTACCTGGAACAGTTCGCGC 77285 28 100.0 32 ............................ CAAAGGCGCGGTTGGTGTGGCGCAGGTCACTG 77225 28 100.0 32 ............................ TGGTGCGCTGCGTTCGTTGGCGCGATGTTGGA 77165 28 100.0 32 ............................ TCGATAACGCCCGGTAAATACGTATCGACAAG 77105 28 100.0 33 ............................ CATTGGTAATCCTTTCGAATATTCATCATCACT 77044 28 100.0 32 ............................ CGGATAAATGGACGCTGGAAAGATGTGCCAGC 76984 28 100.0 32 ............................ TCAGCTTGAAACGGTTTTTGGCGCCGTTATCA 76924 28 100.0 32 ............................ AGGCGGGTCAGCGGGGCAGGCGTTTACCCCGT 76864 28 100.0 32 ............................ CGGTACGCGTACCGCGCCACCGCCGTCTTTTC 76804 28 100.0 32 ............................ AGACTGCCAGCCCCTGAATGCTGCGTTTTCAC 76744 28 100.0 33 ............................ GGGAGTGAACATCGAACAGGAATTTCGAAACAT 76683 28 96.4 32 ...T........................ CATAGCCGAGGCGGCGGATCGTGTCGCATAAC 76623 28 96.4 32 ...T........................ AGGTACGCCGGACGCAGCCCCTCTGTGCCCGT 76563 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76502 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGCCTGCAGGATTACTGCCAGAGCAGCGCAATATTACCCGTGCCCCAGGTTCAGGGCTGGCGCACCGTGACGCGTGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAAAAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTAAAATACGCCTCGCTAACTTGTTGATTTTTATAATAGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCGTTTATATGATTATAAACAATGGATTAAGCTATTTTTGCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 86626-86056 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCT01000012.1 Cronobacter sakazakii strain MOD1_LR703 csakLR703_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 86625 28 100.0 32 ............................ TGGTGCCGCTAACCGTACCGGCTTGGCCTGTT 86565 28 100.0 33 ............................ TAGCGAGTATCAAATGCTCGCGAATCCGGCTCA 86504 28 100.0 33 ............................ TGCCCCACGCCGCATGTCACACCCAGTCACGTT 86443 28 100.0 32 ............................ TGCAGACGGCACAGAACGCCGACAACGGGTTC 86383 28 100.0 32 ............................ GATGGGCTGGTGGGGTGACACTTACCCCACGA 86323 28 100.0 32 ............................ TGGACTGGTACCGTTATCGCGAACCACCTCTA 86263 28 100.0 32 ............................ CAAGCCAGTTTCTCAGCGTCCAGGCGCGCGTA 86203 28 100.0 32 ............................ ATTAGCCAACACGAATGAGCCGGATTTAACTG 86143 28 100.0 32 ............................ TGGCAGCAAAGCCGCGCTAAGGCTTAACGGGA 86083 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAAGCATTGATTTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGACATTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ACTCTCAGCCACCCGCCGGGGTTGGATACGCCGTCTACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTGTTATCGTTATATAAATAACGGCGCAATATCATGGGAAAATTATACATAAATTTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACAGTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90662-92214 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCT01000013.1 Cronobacter sakazakii strain MOD1_LR703 csakLR703_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90662 29 100.0 32 ............................. TCAAAAAGTCTGGTTATTGGGAGTGTGCTAAC 90723 29 100.0 32 ............................. CTGTTAGGTGCTTTAGCTGTTAATTCAGTGTT 90784 29 100.0 32 ............................. CTTACGTCCAGAGAGTTCGTGATGGGCTACCA 90845 29 100.0 32 ............................. GTTTCTCACCCTTTACCAGTACGGAATAACCA 90906 29 100.0 32 ............................. TCAGCACCGAAGAACAAACGATCTGCCTCTTT 90967 29 100.0 32 ............................. CGTTCAGAGGCGGTAACAGTGGTGGTCAGCAA 91028 29 100.0 32 ............................. CACAACAACGTCAATGGTGGAGTAGAGCATTC 91089 29 100.0 32 ............................. TGCCGATACCGGCAATTTTTCGGGCGGCGGTA 91150 29 100.0 32 ............................. TCTCAGGGCATTGAATGGGTTGCCAAAATCAA 91211 29 100.0 32 ............................. TACTCCTTCTAGTGCCGATGCCGGCAATTTTG 91272 29 100.0 32 ............................. TTCGTTGGCGCGGCTGTCGAAAAATGCAGGTA 91333 29 100.0 32 ............................. AACGCGCAGGACCTGGTAATTATCGCGGCTCG 91394 29 100.0 32 ............................. CCAGCGCGCCGAAACAGAAGGGCCAGCGCTAC 91455 29 100.0 32 ............................. ACGCCACAGAGTCTATTATCAACGCACTGGCC 91516 29 100.0 32 ............................. CGCATTCCCGGCTGCCTTTACGCTGGCTGCGC 91577 29 100.0 32 ............................. CGACACAGCGATAACAGAGCCGACAACAACGG 91638 29 100.0 32 ............................. AAAATATAGGTACGCTTATTAGATACCAGCGT 91699 29 100.0 32 ............................. CTCTGGCCCATCATGACGGACTCATCCTGCGT 91760 29 100.0 32 ............................. GTGGCCCAGCGCCGGAAGGCTTCGAAAGACTT 91821 29 100.0 32 ............................. CATCCACTTCGCGCCGCGGCGGTATTTTTTGC 91882 29 100.0 32 ............................. ACCGCTATCCAGTGGGGGATTTACAGCCCTAA 91943 29 96.6 32 .C........................... GCTTATATCCTCTCCTGCCTGATTGCCTCCGG 92004 29 96.6 32 .C........................... CATACGGGTCATAGTCTGTGATTGTGCGGCCC 92065 29 96.6 32 .C........................... GGCGGTTTGGATTTGGAAATTTGATACAACTG 92126 29 96.6 32 .C........................... AGCTCATGAAGCGCAACAGCTTCGGCTCTCTG 92187 28 75.9 0 GC.......-...C...C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGATCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : GCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGTGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 118612-119738 **** Predicted by CRISPRDetect 2.4 *** >NZ_PVCT01000013.1 Cronobacter sakazakii strain MOD1_LR703 csakLR703_contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 118612 29 100.0 32 ............................. GCTGCGCTTTCTCTGGTGCATCGATATCAACC 118673 29 100.0 32 ............................. GTTTCCGTTTTGGTGCATCTGCAACGAAACTT 118734 29 100.0 32 ............................. CTTGTTCGAGCCAGAACTCTCGCGGATAAAAC 118795 29 100.0 32 ............................. AACTCGCCTGTGAACGACTCGTCATCCTTATC 118856 29 100.0 32 ............................. ATAAAGACAGCCTGGATCTGAGCACGAATGAT 118917 29 100.0 32 ............................. ATAAAGACAGCCTGGATCTGAGCACGAATGAT 118978 29 100.0 32 ............................. GCGTCTTTCTTACGGTCAGTCTTGATACCGCG 119039 29 100.0 32 ............................. TAGACCTGCGGTAACTCTGCATTAGCCGGAAA 119100 29 100.0 32 ............................. TCAGGCAATATCATTTTTGTAGCAGGCGTATC 119161 29 100.0 32 ............................. TTTCCGCTCTTGTGCTGATTGCATACCTGGCA 119222 29 100.0 32 ............................. TTTGCCGGCCTGATGCTGTCTATTGCTCTCCC 119283 29 100.0 32 ............................. TGAGGGTGGTGACCTGCGAAATGGGGTTGTTT 119344 29 100.0 32 ............................. GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 119405 29 100.0 32 ............................. GTTGGGTAAAAATCCGTGTTTGTTCTTTTTAA 119466 29 96.6 32 .........................A... CTTGTTTATCAGGCAATCAGCGCGGTAGCCAA 119527 29 93.1 32 ...........G.............A... CGTGCGCAGATCGCCGAGTGTGTATTGCGCCA 119588 29 93.1 32 ...........G.............A... CGAAGACCAGAGAATAGCCATAATTTGGCGGT 119649 29 93.1 32 ...........G.............A... TCGGATATTGTTGTTGAGCTGTCCCGCAGAAA 119710 29 89.7 0 ...........GG............A... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCGCACGAGCGGGGATAAGCCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCGTGGGCCACGAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCTTTTTTACCGCTTGAAAATCAGTAAGTTAATCGTTCTTTAACAATGTGAGATTGTGAACCAAATGTTGGTGGGATGTTGTTGCCTGAAAAAGCGTAATAAATACAGTTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAAGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAAGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGAGCGGGGATAAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //