Array 1 728289-727616 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPG01000001.1 Listeria ivanovii strain ICDC-Liv035 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 728288 29 100.0 37 ............................. TGTCTCGTCGAAGTATCTGCTTTAGCACCGCGATTTT 728222 29 100.0 36 ............................. ATAGATAAAACTCTGTAATTCTTCTCTGTGTTCTTC 728157 29 100.0 36 ............................. TTATATCTCACCTCCAAAGTACTTTCCACAGTAGTA 728092 29 100.0 36 ............................. TTCCCTGCATCAGCTAAGATTTTTCTCGCTTTTTCT 728027 29 100.0 34 ............................. TCACCACATAATTTTCTTTTTGCTCATAGTCTGT 727964 29 100.0 35 ............................. ATTTTACAGAGTTCAAGAAATATTTTCTCGCATGG 727900 29 100.0 35 ............................. TTAGAGGAAAAGCAAATTAATAGCATGCAATAAGC 727836 29 100.0 37 ............................. AGCTTCCTTTTTTTAAGAAATTAGCAACATTTTCAGC 727770 29 100.0 34 ............................. GGAGGAACAGCGACCGGTTTCGGCTCGGATATTA 727707 29 100.0 34 ............................. TTCTTCTGGCGTCTTCCAGTTTGTCATCTGCTTT 727644 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 99.7 36 GTTTTAATTACTTATTATGAAATGTAAAT # Left flank : GTTTAAAATTTGGTGGTAGATATATGTATGTTATCCTAATTTACGATATTTCGGTGGAAAATGGAGGTGCCAAAGTTTGGCGCAATGTATTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGGGAAATAACTCCAGCGCTTTTAGTGAAATTACGAATGGAATTAGATAATTATATTCGTGCAGATGTAGATTCTGTGATTTTGTTTTCTAGTAGACAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTAGCAGATGAAAAAACATCGAATTTCTTTTAGGTGGCTTGTTTCTGTCGACCTCTAGTAGTGTGAAAAACACTAGGGATCGACAGAAATGCGGAATTCGCTGGAGGAGAAAGGGTTTCAGAGATTTCGATTCTTAAAAAAGAAAAAGTGAAATAAGTTTTCCACATTTTAGCGTAGGTCGACAAAAATAGGCCCTTGAGGCAAGATGGGAGTAGGGTAAAAAGTTGACGG # Right flank : ATTTTTTGTGTCGAGCCAATTAAATTGTGTATTTGAATTTTAGCTTCTTAACATTAATAGATAAAATATTCATTGAATTTCTAAATCTCTTTGTCAAAGTAAATGTGGGAAATAAGATGGTATAGGCTAGAAGAAAACAAAGCAAAAGTTTGCGAACTAGAAATCCAGTAAGTACCTTGCAAAAGAAGTAAAGCGCATGCGGCGAAAAGACATCACCGAACTAAATGGTTATATTTACAGGTTAAGAGGTAGCAATACAATAGTAAAAATTGGTCCGAAAAATCAAAGGAGCAATCACAGACTCAGAGGACTAACGAATATAGCGATACCTTTAGAGCAGATAAAAAGCTTTAAGGGTATTTTTATCTCCAAAAATCTCTCTTTTACTGGCCCATCCCCATATTCCTAATTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAGTAACATAACTCTAAACTTATAATGAACGTAGTAAATGAGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 746885-746470 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPPG01000001.1 Listeria ivanovii strain ICDC-Liv035 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 746884 29 100.0 35 ............................. CTGTATAAATTTCATCCGATGAATTTCGACATCGT 746820 29 100.0 36 ............................. AAGTTTCTAATTCTTGCTTTTCGTAAAGTTTCGTAT 746755 29 100.0 36 ............................. CTATTTTTACATACTTGAACAAACAGCTCGAACTCT 746690 29 100.0 34 ............................. AAACTATATTCAGCAGAGGCGAAAGATCCTCAAA 746627 29 100.0 36 ............................. GTGATAGAAATGTGAGGACTATCCGTTGCCACGCCA 746562 29 96.6 35 ................A............ ACATACAAAGCGGTTTGGAAATTTTCTGAACCAAC 746498 29 82.8 0 .......C....C..GA.....A...... | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 97.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : TCAGCTGACGTTCTATTAGAAAAAGGTGCTGTAGAAGTAATCGCCTGTGCAACTCATTCAGTTATGGCTGGAGATGCAACAGAACGATTACAAAACTCACCAATCAAAGAAATAATCATATCCGACTCCATCGACCTTCCAGAAGATAAACAATTCGAAAAGCTAACAACTATCTCCATTGGTCGAATCTTAGGTCGTGCAATCGAAGGGGTTCAAGAAAATCGCTCGTTGCATCCACTTTTTTAAGGAGATTAATAGTAGGAAATTGGGAACAGGGCTTCTATTGGGGCTCTGTTTTTTTATGAACTATTATCTGTCGACCATCAGTAGTGCAGAAAACAGGGGAGGTCGACAGAAAACTGGATTGACTGTGAGAGAATGAGTTTGAAGCTTTTAAAGTTAGTTATTAGTAGTTAGACATTCAAATTTCACCCGATTTGAAGAAGGTCGACAATAATAGGCGTTTGAGGTAAGATGGGAGTAAGGAAAAAATGAAGCGG # Right flank : TTGTCTAACCTTTAAACATATCTACAATATTAGCCAACTCAAAAACAACAAGAATACATAAAAAGGGAGGAAACACCAATGAAAAAAGCGCTTTGCCCCATCCTATTGCTATTGATCCTACTAGCCAGTTGCTCCACGCAAGATGAAACTCTATCCCCGAATACCAAAATTCATAAAAATAGTGTCATTAGAGCTGATTATAAGATACCACAAAACCTGGCAGAACTAGAATCAGACAGCGAAGATATTGTCCAAGTAAAATTAATACGAAATAAAGAAATTGGTAAAGGAAACAACAGCTCAATAACGGAAGTAGAAATAATCAAAAACTACAAAGGCAGTTTTGAGCCCGGTGATAAAGTGGATATTTCAGAACCGTGGCTTTTAACTTCAGGAGAATACCAAGCGGTGGAAAATTACATTGCACTCGAAAAAGGTCAAGAATATATCCTGTTTTTAAGTGGTGGACATGGCACGGATAAAGTAAGCTCAATCACGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //