Array 1 168639-165071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIUZX010000007.1 Shewanella chilikensis strain AmN21-7 AmN21-7_ctg007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 168638 28 100.0 32 ............................ GTTAGCGAGCAGGCCAACCAATACGGCGAGGA 168578 28 100.0 32 ............................ AGTGACCAGGCTGTTTGCACCCGGTTGTTGTT 168518 28 100.0 32 ............................ TGCACGACTCCGGGGACATTTGGACCAGGGCA 168458 28 100.0 32 ............................ GTCAAAACATATAGATGAACAGACGTGGAGGA 168398 28 100.0 32 ............................ TTACCGTGACGTTCAGGAGTAATTAGAATCTG 168338 28 100.0 32 ............................ TTAAAGGCTGGCTCTATCTTGCTCGCTGCGGA 168278 28 100.0 32 ............................ TGACTGCCTCTGCCAAGCCGTTTTTCCTTCCC 168218 28 100.0 32 ............................ TTGACCAGAAACTACAGGTGACCGCTATGGAC 168158 28 100.0 32 ............................ CTTATGAAAGCCTTCCTTCTTCTTGGTCTACC 168098 28 100.0 32 ............................ TGATATACAGTTCACTCGCAAGCCTTCAAATC 168038 28 100.0 32 ............................ ATCTTTGTAGGCTCAGCAGTGCCAGACCCTTT 167978 28 100.0 32 ............................ TTTCTATCCTCGATAGCTGAGCAGGCGATACG 167918 28 100.0 32 ............................ TCTTTGACCACCTCTTTGGTGGCTACTGTTAG 167858 28 100.0 32 ............................ GTTTAGCCCGGCAGCTATGTCTGACCAGATAT 167798 28 100.0 32 ............................ CCATCCAATACCCCGTTGAGGCCGCCGTTGGT 167738 28 100.0 32 ............................ AAGAATGGCACGAGGCGTGGCAGGAATAGCGC 167678 28 100.0 32 ............................ GATTGTCACACCTGGCTTCTCGAGCTATACCG 167618 28 100.0 32 ............................ TGTAGCGGTGTTCCAGTTCACAGTGGAGTTAT 167558 28 100.0 32 ............................ TATCTCCAATGATTGCGCATCAAGTATAAAAA 167498 28 100.0 32 ............................ TAAGCGGGGCTTTTTTCGTTGTGGCTTGAGCC 167438 28 100.0 32 ............................ AACCGGAACACGCATCATCTTGGTTGGCTCAC 167378 28 100.0 32 ............................ TACTCAGAGCGCTTAGCATCAGGGGTCAAAGA 167318 28 100.0 32 ............................ AGGGTGCCGGCCGTCCCAGGTCTGAACAGACT 167258 28 100.0 32 ............................ AAGCAGGGCAGCCGATAGTTCAGAAGATTTAC 167198 28 100.0 32 ............................ GGAAGGCGGAATATACTCCTGATAATTACAAA 167138 28 100.0 32 ............................ CTGATGGAACGCTTCCACCTCCTACTGAGCCC 167078 28 100.0 32 ............................ GCCAGTTGGCATCATCGCCCATGGGCGTCCAC 167018 28 100.0 32 ............................ ACCTGGCGCATTCCATGCTAGTAAGCCCTGCC 166958 28 100.0 32 ............................ TTCCTTGGCGGTTGACGATCATCTTGAGGCCA 166898 28 100.0 32 ............................ CATAAGTACAACTTGTGGCAAGTAGCATTGCC 166838 28 96.4 32 ....A....................... GCCGCGTTGGATTGGTTCGCTTTGAACAAAAA 166778 28 96.4 32 ....A....................... ACAGGGACGGTAACACCGGCCTCGGTCAATGC 166718 28 96.4 32 ....A....................... GCCTTCCAATTGCCCTCAACGTAGCTGCTTTC 166658 28 96.4 32 ....A....................... AATTACCCGATTAACACCCGATATTTCCCCAT 166598 28 96.4 32 ....A....................... GGTATCTTACACGAAACAGTAACAATTGTTTC 166538 28 96.4 32 ....A....................... GACATGAATTTGCGGCGGTCGAACATTGAAGC 166478 28 96.4 32 ....A....................... AGACGCCCTTATCTGGCTCATACAAGCATAGA 166418 28 96.4 32 ....A....................... TTCAAAGAATAGGCTTATAGGTGATGTCGAAT 166358 28 96.4 32 ....A....................... TCCCTGGGGGGATTGGCACTATCGTTCGTAAC 166298 28 96.4 32 ....A....................... GTATTGGGGACGTTGCTCAGCCCTATCTCAGC 166238 28 96.4 32 ....A....................... TTGTCGGCCACTCTATCGACTTCCTCTTCTTG 166178 28 96.4 32 ....A....................... AAGCGGTCAATCCACGGCGGGCAGCTTGTTGT 166118 28 96.4 32 ....A....................... CATATCGACCGCACCCAAGAATGTTTCAACTT 166058 28 96.4 32 ....A....................... ACGCCATAGAGTTTCTAGACGAGGACGGCAAA 165998 28 96.4 32 ....A....................... TGTAACTCAGTGATCTTGGCTTGCAGGGATTG 165938 28 96.4 32 ....A....................... ATTAGGGCTTGGCTTGGTACCGCTCCGGCTTC 165878 28 96.4 32 ....A....................... CTAACAAGCACCTTTACCTTGTACACAATTTC 165818 28 96.4 32 ....A....................... TTATAGTCACTTTTGAATTTATCATATTGATC 165758 28 96.4 32 ....A....................... TGCTGCTGGCCAAACTGGGTGGCATTGTTCAG 165698 28 96.4 32 ....A....................... ACCAATGAGGGTTTAATAATGAATAGTGAAAA 165638 28 92.9 32 ....A.......C............... ATCAAGTACCGCGCACTGGTCGCCAAGCGCCA 165578 28 92.9 32 ....A.......C............... TTTTGCCGGTCGAAATGGAGCTATCCAGTTTG 165518 28 92.9 32 ....A.......C............... ATCACACTGAAGCTCAAGGAGCTGAATGTTAG 165458 28 96.4 32 ....A....................... AATCCAGAGCGGTGACGGTAGCCCATAGTCAC 165398 28 96.4 32 ....A....................... ACCACAGCCGCTAACACACTTTTCAAAAAGGC 165338 28 92.9 32 ....A....T.................. CAAATCAGTATCTACCTTTTCCATAAGTCACC 165278 28 92.9 32 ....A.......C............... ACAGTTGTCTGGGCAGACGTTATTAGAGCAGA 165218 28 92.9 32 ....A.......C............... AATAAAGGCCATTAGCGCAGGGATGCCGATTA 165158 28 92.9 32 ....A.......C............... GTCCTTTCTTACAGGGGGTAACTCCACGGTCG 165098 28 82.1 0 ....A...T.A.C...A........... | ========== ====== ====== ====== ============================ ================================ ================== 60 28 97.6 32 GTTCCCTGCCGCTCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTGAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATCGAAAGATATCCGCAAAGTACACCTGTGGATGGGCCGTTCGATTGCTACGGGCTGAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGTTTTATATACAATCAGTTACAACAGGTGGTGCTCAACAGGGTAAAAATAGGTTTTTTATCCTAACCATCTGTTGTGACTTTCTTTTATTGCTTTATTCTATT # Right flank : GGTCTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTGCGGGGATTTATCTACAACCTCAGCAATATCTGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGTGATCTAAATAGCGGCCCGGCTCAAGGCAGCATGTCCACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGACAGTTGGAAGCGTCCTGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCATGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAACTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGTGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTGCCGCTCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCTCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //