Array 1 12328-11202 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOB01000119.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 83-1068 SEEH1068_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12327 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 12266 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 12205 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 12144 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 12083 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 12022 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 11961 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 11900 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 11839 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 11778 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 11717 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 11656 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 11595 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 11534 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 11473 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 11412 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 11351 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 11290 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 11229 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26843-25179 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOB01000009.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 83-1068 SEEH1068_50, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 26842 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 26781 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 26720 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 26659 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 26592 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 26531 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 26470 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 26409 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 26348 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 26287 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 26226 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 26165 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 26104 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 26043 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 25982 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 25921 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 25860 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 25799 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 25738 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 25635 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 25574 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 25513 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 25452 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 25391 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 25330 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 25269 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 25208 29 96.6 0 A............................ | A [25181] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //