Array 1 16201-15076 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDK01000013.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000214 CFSAN000214_contig0012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16200 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 16139 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 16078 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 16017 29 100.0 32 ............................. AGATATGAAAAACGTAAAAATTTACACCGCCA 15956 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 15895 29 100.0 32 ............................. CAGGCTGGTGCCATAGTTTTGAGTTTCTACCG 15834 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 15773 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 15712 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 15651 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 15590 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 15529 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 15468 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 15407 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 15346 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 15285 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 15224 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 15163 28 96.6 32 .............-............... GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 15103 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7975-6602 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRDK01000062.1 Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000214 CFSAN000214_contig0061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7974 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 7913 29 100.0 32 ............................. GGTGACGGCTTTGTCCGACCGCATCCGGGCCA 7852 29 100.0 32 ............................. ACGAGGGACGGCTGGCGCTGGAGAGATTTTCA 7791 29 100.0 32 ............................. ACCCGCTCCGCGCAGCTCGCAGCGTAATTCGA 7730 29 100.0 32 ............................. ACACATATACTCTCCCCGTTTGCATCATCAGG 7669 29 100.0 32 ............................. ATCGCTAAATCTAAAATGCCCTCGTACAGTGA 7608 29 100.0 32 ............................. CGCAATAAACGGCATCAGCTATAGCTTGATAG 7547 29 100.0 32 ............................. AAACTGCGTTTGAGTTCCAGCCGCTTTTTCCT 7486 29 100.0 32 ............................. GCCGACGACAAAATCACGGTCACAACGGGTAT 7425 29 100.0 32 ............................. GATTCGACTTTATAGGGATTGATTAGAGGAGA 7364 29 100.0 32 ............................. TTATCTATGCCATAGTGACCCCACGTTACATA 7303 29 100.0 32 ............................. TATAATTGGCGTCCATATATCTGGATATTTAC 7242 29 100.0 32 ............................. ATTGTTTCCCGCTTGCGCTTGCATCGCCGGAT 7181 29 100.0 32 ............................. CTTACTATCAGCTCGCGTGCTGTTTGCAGGCC 7120 29 100.0 32 ............................. GATGCCAAACTGGTCAAGCTGGCGATTATCAA 7059 29 100.0 32 ............................. ACCATTACTGACGTGATGGCGGCGCAAGGGTT 6998 29 100.0 32 ............................. GGAAATAAACTCCTTGAGCAGCGGCAAGCAAC 6937 29 100.0 33 ............................. TGTGAACGTCGGATAAATACCGATTCCGCCTGC 6875 29 100.0 32 ............................. AGTTTCTTGTGACGCTTCTATTCAGGACAAAA 6814 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 6753 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 6692 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 6631 29 96.6 0 ...............A............. | A [6604] ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //