Array 1 170709-171799 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MVFJ01000017.1 Streptococcus agalactiae strain S11-219 S11-219_Contig2, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    170709	    36	 100.0	    30	....................................	ATAAAGAATGACATAGATGTTTCGTCTGAG	
    170775	    36	 100.0	    30	....................................	ACGTCTTCAGGTGTTATTCTTGGGTCTTCT	
    170841	    35	  97.2	    30	...........-........................	AATTTAAAATCTTCATCTTCTATACGTTTG	
    170906	    36	 100.0	    30	....................................	TAAAGCTAACGTTAGTCGTTCGCTCGTGGT	
    170972	    36	 100.0	    30	....................................	AAAAAGCAATGGAAGCTAACGAGATTGCTA	
    171038	    36	 100.0	    30	....................................	AGTAGAAACATAACGATAATTCCATGAATA	
    171104	    36	 100.0	    30	....................................	ATGTTGTAGAATCATATCGACCATATAACC	
    171170	    36	 100.0	    30	....................................	GCTTGGTCTCGAAGAATTACAGAAGAACAT	
    171236	    36	 100.0	    30	....................................	CAATTGATTGCCGTTAAAACCGATAGAGGA	
    171302	    36	 100.0	    30	....................................	AAAAAGCAATGGAAGCTAACGAGATTGCTA	
    171368	    36	 100.0	    30	....................................	TAATACTTTTACAATATGTGTTTTCACTAC	
    171434	    36	 100.0	    30	....................................	AAGTGCCACAGTTTGTGGCTGATTGGATTG	
    171500	    36	 100.0	    30	....................................	CATTCAAGGACTACCCTCAACAGTAACTCT	
    171566	    36	 100.0	    30	....................................	TTCTATCTTCTGAAGATATTTCACAAGTGA	
    171632	    36	 100.0	    30	....................................	TCAGCGAGATGCTCTAAGTAAGCATGTTGA	
    171698	    36	 100.0	    30	....................................	TCTTCTTTTTAATTCTTCTAACACTCCATC	
    171764	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	  99.8	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CATCTTCTTTTGACCTAACAAAAGGATATGTGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGCTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0.41   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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