Array 1 786471-785245 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFK01000003.1 Streptococcus equinus strain NCTC12969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 786470 36 100.0 30 .................................... TTTCAATTTCATCAACACTTTCCACTTCAT 786404 36 100.0 30 .................................... CACCTAAAACTGACATTACTGCAGGAAATC 786338 36 100.0 30 .................................... CCGTCAATGTATGAAGTGTTATGTTTAAAA 786272 36 100.0 30 .................................... CGTCAAGAGTTGATGGAAATTGCAGGCGAG 786206 36 100.0 30 .................................... GACTACACCTGCGTGGGACGATCCCTATGG 786140 36 100.0 30 .................................... TGTTATTAGGTATTTCATTATCTTAGCTCC 786074 36 100.0 30 .................................... CGTCAAGAGTTGATGGAAATTGCAGGCGAG 786008 36 100.0 30 .................................... AGTAGCTAGGTGGCTTAAAACCAGCGTAGG 785942 36 100.0 30 .................................... AGTAGCTAGGTGGCTTAAAACCAGCGTAGG 785876 36 100.0 30 .................................... CAGACCATATGCCGTGCATTTATTTAATTC 785810 36 100.0 30 .................................... TAACGGCATTCAAGGGAATGCAGATGGTAT 785744 36 100.0 31 .................................... AAGCAAATTTGTATAGTATGATTCGAGCGAA 785677 36 100.0 30 .................................... TATCAATGATTCCTTGCATGCGTTTGTTAG 785611 36 100.0 30 .................................... TGAAATCAAGTCAAACGTAGCTCAACTGCT 785545 36 100.0 30 .................................... TTAAATACAGGCTTGCAAGCTAAGGTTTCA 785479 36 100.0 30 .................................... GAGCAAACGATGAAGCTCTATACATACGTT 785413 36 100.0 31 .................................... TGTTTTAGCGTGCGTAGTGCATAGGCCTTCA 785346 36 100.0 30 .................................... ATGTCAAATGAACTTAACAAGAAAACTGCT 785280 36 97.2 0 ................A................... | ========== ====== ====== ====== ==================================== =============================== ================== 19 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCCCTTTGGTTTGGGGAATAAAATAATTAAATAAGGAATCATTCGGAGCTGAAGTCAGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGGAAAAATGGTCCACGAG # Right flank : TTGTGGCTACTAAATATGAATATAACAAAACCCCACCTAGTTCGTCACTGGGTGGGGTAATCTATATGGGTCATAGGTTTGCTAGGTTAGATTGGCTTAGTCGTTCAAGTGGTCTATGGCAGACTGAGCTTCTTCGGCGGTGAATTTTGCGCCGTCTTCAGAAGTGAGTTGTTCGTAGATTTCATCTGATGACAAGTCTAGTGTTTTTTTATAACTTTTTGCTTTTTCCAAGGCAGCTTTTTTATAGTCTAATTTGGCATGGTCGATAGCGTACTGAGCTTGCTCAGCAGTAAATTTATCGCCATTTTCGTTAGACAATTGGTCGTAGATGCCTTGTTTTGACATGTGCATAATCTTATAATAGCTCTTTGCTCTTTTTAGCGCAGCCTTTTTGTAATTAGCTTTCAAATGGTCAATGGCATACTGAGCATCTTCGGCAGAATATTTTTCAACATCTGATGTCAATTGGTCGTAAATGTCTAATTTTGACATGTTCATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 788244-787079 **** Predicted by CRISPRDetect 2.4 *** >NZ_UHFK01000003.1 Streptococcus equinus strain NCTC12969, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 788243 36 100.0 30 .................................... TCTTACTGTCTCTGGCTAGCTTCGCTATTA 788177 36 100.0 31 .................................... CAGCGTTTAGAGTGTCTGCTGAGCGCACATT 788110 36 100.0 31 .................................... AGCAGATTGGTAAGATGACACATCAATAAAA 788043 36 100.0 30 .................................... CTCAAACAGCGCACGCGACTCATGGTTTGA 787977 36 100.0 30 .................................... CAGTTCATCTTCATCATCTGGTGGAACAGA 787911 36 100.0 32 .................................... TTATTAAATTTAAAAACGACTGTGGCTACTCT 787843 36 100.0 31 .................................... CTATTGACCCGACTAATTTCACGACTAATAA 787776 36 100.0 31 .................................... CTCATAAATCTCTTTGCCATAAATGTCTTTA 787709 36 100.0 30 .................................... CTATCAATTGAACGAAGTGACAACACTGAA 787643 36 100.0 30 .................................... ACAGCTATAGACGTGTTCATTTTTTTAAAT 787577 36 100.0 30 .................................... GGTGGCCTATGAATCATCGGAGGGATATAA 787511 36 100.0 30 .................................... GTTGTCACTAGTCTGCGCTTCATGTCCAAA 787445 36 100.0 30 .................................... TTGAAACACGTTTTAATTTTAGGTATGACC 787379 36 100.0 31 .................................... GAATTACAATTCATCTATTTTGAGACTTGCA 787312 36 100.0 30 .................................... ATTGACAAACGATGAAATTGACCACTATAT 787246 36 100.0 30 .................................... TATGATAATTTCAGCACATTCATTACAATA 787180 36 100.0 30 .................................... TCACCTGAAGTCCAAGCTCCAGAACCTTTC 787114 36 77.8 0 ....G...............T...AAA...TCT... | ========== ====== ====== ====== ==================================== ================================ ================== 18 36 98.8 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TTTCACAAAGAAGAAGGCGGAAGTTTTTGGGTAGAATTTCCAGGATTCGGTGGTGGAACCGAAGGTAAAGATATCGAGGAAGCTATGAAGAATGCTCGTGAAATGCTTGAGAGTTCGCTAGCTGCGTATCTAGATGAAGGACTTACTCTTCCAAAAGTTATTGATATGAGTGAGCTAACCGTTGATGATGGCTTCATTACTCTGATTCAAGCTGATCCTTCACCGTATTTAAAAAAGACAAAAGCTATTCGTAAAAATGTTACAGTACCAGAATGGTTGGTCAGATTAGCTGACCGTGAGCAGGTAAACTATTCTGAGGTTTTAACAAAAGCTTTGGAGAAAAAGTTGCAACTATAAGTTTTAAGATTGTTCAGGAACGTTGAAAAATCAAGGCTTTTAAGGTATAATAAAGCTAATATTATGGAGCTATTCGAGGCTGAAGTCTGGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATTGGTCCACGAGG # Right flank : TAAAACTTTAGTTAAAATCACTTTCAATGTTTTTCAAAAGTTTTCTTTTATGGTAAAATTGAAAGTGAATTTATTTTAGTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGACTTGTTGGTGAAGTACTTAAACGTATTGAACGTCGTGGTTTCAAAATTGAAAAATTAGAAATGCGTATGGCAACTCCTGAGTTGTTAGAAAAACACTATGAAGACTTGGTTGACCGTCCATTCTTCCCACTAATCGTTGACTTTATGACAAGTGGTCCAGTGATTGCTGGTGTTATGTCAGGAGAAGAAGTGATTACTTCTTGGCGTACAATGATGGGTGCAACAAACCCGAAAGAAGCTCTTCCAGGAACAATCCGTGGTGATTTTGCTCAAGCACCAGCTGAAGGCGCTGCAACATTTAACATCGTTCACGGTTCAGATTCACCAGAATCAGTAGAACGCGAAATCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //