Array 1 387-1314 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQZY01000037.1 Pseudomonas aeruginosa strain env331b NODE_37_length_50370_cov_12.3364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 387 28 100.0 32 ............................ CCACCGAAGAACCCTTCGAAGGCGCCCATGTC 447 28 100.0 32 ............................ AATCACTTCAGTATCCAGGCCGTACCATTGCT 507 28 100.0 32 ............................ GTCAGACGGGACAGATCAGCATCCGGCTCCTG 567 28 100.0 32 ............................ TGCCGGCGGGAAGGTTGCCGGCTTCCCTGGCA 627 28 100.0 32 ............................ TGATCGAGTCCAGCGAGCCGCTCGACTGGTCA 687 28 100.0 32 ............................ TGGGCGCTGGCGATCGATGTTGATTGCGAGCC 747 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 807 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 867 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 927 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 987 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 1047 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 1107 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 1167 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1227 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1287 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGCGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12137-10188 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQZY01000037.1 Pseudomonas aeruginosa strain env331b NODE_37_length_50370_cov_12.3364, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12136 28 100.0 32 ............................ ATTATGCGAGGCCACAACGGCCCCAGGATCGA 12076 28 100.0 32 ............................ TTGGAGAAGCGCCCGCTAGTGTCGAGCAGCTT 12016 28 100.0 32 ............................ AGGCTCTCGCGCTGCTCGCCGGTGCCGTCACC 11956 28 100.0 32 ............................ ATGCTGAGGGTAGCTACAGCACGAAGTTTCGC 11896 28 100.0 32 ............................ TACGTGATCCTCGCCGAAGAAACGCCGATGCC 11836 28 100.0 32 ............................ AAGACCATTCAAGTCCGGGCGAATCAATGACC 11776 28 100.0 32 ............................ GAACTCTATCCGGAGACACACGATGAAGCGAA 11716 28 100.0 32 ............................ TCCTTCAACTCCTCGGAGTCAGCCGGGTCACT 11656 28 100.0 32 ............................ TGGACCGCTAGCCCAGGCGATCCGGGACGACT 11596 28 100.0 32 ............................ CAGCGGTTCCTGGAGCAGTTGGATATCAGGCC 11536 28 100.0 32 ............................ AGGGTCAGGTCGTCGGCGTGAGTCGGCACCCA 11476 28 100.0 32 ............................ GATCACCAGCGTGACGAATCGCAGCCAACCCA 11416 28 100.0 32 ............................ TCAACGGGGATGCTAACAGCCAGTATCATACC 11356 28 100.0 32 ............................ ATGAACACAGACTCCGAGGGGCGGCCAGAGCG 11296 28 100.0 32 ............................ AGCCATTCGATGTGACCCGTAACTCGCTGGTC 11236 28 100.0 32 ............................ TCAGGCGAGTCGATGCCGGCATCGAGCAGTTC 11176 28 100.0 32 ............................ CACTCCAAGCGTGATCATGGCGGCGTTTCGCA 11116 28 100.0 32 ............................ GATCCGCGTGTCTCGGTGCTGCTGTTCAACAC 11056 28 100.0 32 ............................ TCGAGGTCGGCCAGGTTCAGGCGGTTGACGTC 10996 28 100.0 32 ............................ ACCGGCGCCGACTGGCCTTCGATCCAGATAAC 10936 28 100.0 32 ............................ TTCCAGGGCCTTCAGGTCCGGGTAGTCCTTGG 10876 28 100.0 32 ............................ TCAATCGGCAGATCGCCAACATGCGGTCGAGC 10816 28 100.0 32 ............................ TCTACGAGCAGACCGAGTTGAAAGGACAGGAG 10756 28 100.0 33 ............................ CTGCCCCGCTCTACACCCAGCCTGGGGCTTCCT 10695 28 100.0 32 ............................ TAAACGACCGCACAGTTACTCAGTACGTCGAC 10635 28 100.0 32 ............................ GCATTGCACGCTGGTGGGCAACGGGTGCGACC 10575 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10515 28 96.4 32 ....................T....... TTGCGGATCCGGCGGTAGACGACCATCCGCAC 10455 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 10395 28 100.0 32 ............................ TGGTTCCGGCTCAAGCAGCGCAAGGAACTGAG 10335 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 10275 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 10215 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83362-82073 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQZY01000028.1 Pseudomonas aeruginosa strain env331b NODE_28_length_83748_cov_12.8625, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 83361 28 100.0 32 ............................ TCGCTTACTTCGGCCCGGTCCAGCGCATGCCA 83301 28 100.0 32 ............................ AGGGCGCGCCCGGAGAAAGTCACGCGCTTCGA 83241 28 100.0 32 ............................ GCCTCCCGAGTGCGAATCTGGAGTGCCGAACT 83181 28 100.0 32 ............................ TGGTGCGAGGCCAACCGTGCCGAGCTGACCGA 83121 28 100.0 32 ............................ TTCGAACTCCTGCGCATGGAAGGCCTGCGCAC 83061 28 100.0 32 ............................ TTGCGGTTCAGGTACTTGACCTGGCCGTCCTT 83001 28 100.0 32 ............................ TTGGTGACCTTGTCCAGTTGGCTGGCCAGTTG 82941 28 100.0 32 ............................ CACAAAAAAGCCGCCGAAGATGGTTACTAGGG 82881 28 100.0 32 ............................ AGCGCGCTGGGGCGTTATGCGACTCAATCCGA 82821 28 100.0 32 ............................ ACATGGGAATGCTCTCCTGGCACGAAGAAACG 82761 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 82701 28 100.0 32 ............................ ATGCTCATTTCGCCACCTCGATTCCGGCTTGT 82641 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 82581 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 82520 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 82460 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 82400 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 82340 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 82280 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 82220 28 96.4 32 .............T.............. ATCGACCACGACAGTGCTTCCCTGGTCTATTC 82160 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 82100 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 22 28 98.9 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //