Array 1 326-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000112.1 Chlorogloeopsis fritschii PCC 6912 contig00114, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 325 36 100.0 35 .................................... TTTAATTCAGATAGCTATGAAACAAAACTAAAACG 254 36 100.0 38 .................................... GTAAACTCCGCTTTCATTAGGAGTACTGTTATTTGACC 180 36 100.0 38 .................................... TAAAAAAGTGCATCTACTTAAAACAGTCTCATTATACT 106 36 100.0 34 .................................... GTGCGGGATCTTCTTCTTTCATCGGCGTTAAAAA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 36 GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Left flank : TTCCAGAACCCATTGCTGAAAAAAACTATAGTGGTAAATTTCAAGTTCGTATTCCTCCAGAGCTTCATCGTAAGCTAGCCATGGAAGCAGCAGAGGAAAAAGTTAGCTTAAATCGTTATGTAAGCCAAAAACTAGCTTGTTAATTTTTCTGTGATAAGTAGGTAGACATCATTAAATATAAAACTTGAATGTAGGTTGGGTTGACGCTGCTGTTACCCAACATTGATAAAGTTTGATGGGTAACGCTCACGCTCTACCCATCCTACAAATAATTATGACGATCTACTTAAAACACTGTCAGACTACACTTTTCTACGGTCTGCCAGTGTTTTATTTTGTGTACTCTGGTAACTCTTTGGTCAAGTGCTTTTACGAAGTGCAGGGTACTTCATTGTTTGAGTTACCTGCGCTAACGGAAAATTTTGATGAGTATGAAAAGTTCTTGTTAGCTGCAATGAATCCGACATCACGCGGCATCGGGTAAAGAGGGTGGGAGACTT # Right flank : G # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAAAGGTTAGGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 251-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000128.1 Chlorogloeopsis fritschii PCC 6912 contig00131, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================================== ================== 250 24 100.0 54 ........................ GGTTAGGGAAAGCTCCGTTGTTTGCACTGTTTCAACTGAAACGCTACCAGCAAA 172 24 100.0 49 ........................ GGTTAGGGAAAGTTGGCACGGCTATATTCCCCAGCAAGCACTTAACAAT 99 24 100.0 51 ........................ GGTTAGGGAAAGAGGGGAGTGCACCATCTTTGGTGCTAGAGGGGTAATAAT 24 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ====================================================== ================== 4 24 100.0 52 GTTTCCATCCCCGTTAGGGGAAAA # Left flank : TTTGATAAGCCGAGAGGAGTCTTTTTGATACTAGT # Right flank : A # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.50, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTTAGGGGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 22766-21639 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000034.1 Chlorogloeopsis fritschii PCC 6912 contig00035, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 22765 37 94.6 34 ....T....T........................... GAGAATGGTTCGCCTCTATCCACCACTCTTGGGT 22694 37 100.0 35 ..................................... CCATCAATGGCGGTGCTTCCACTGGAGATACAAAA 22622 37 100.0 42 ..................................... TCAATTGGCTGGCAGTGCCGATAGCAGCTATCCAATTCAGTT 22543 37 100.0 36 ..................................... CTCAAAAATGAGGTGATGAATTTCGCTGCTTCACTT 22470 37 100.0 37 ..................................... TGAAGCGAAAGGCTTGATTAAATTTCACCCAGTACCC 22396 37 100.0 34 ..................................... GTTCGTTTCTTACTGTTGCAGTGCTTTTAGTTTT 22325 37 100.0 35 ..................................... ATCGCTACCAAGGCTGACGGTAAAGCTGATAAAGC 22253 37 100.0 39 ..................................... TTTTTACCTTCAACGAAGCGCTTGGCGCTTACATCTTGC 22177 37 100.0 35 ..................................... GTTCCCCAAAGCGCCCGATGCTCAATTAAATCCGC 22105 37 100.0 36 ..................................... TATGGTACCAACGCTGACTTAATATTTATAGATCGG 22032 37 100.0 30 ..................................... TTCTTCAAAAGCTTGCCAGCCTATCATTGT 21965 37 100.0 35 ..................................... GTTCGCCTTCATCAAGGCTCGCAACTGCGCTCGTA 21893 37 100.0 35 ..................................... GGTATTGCAGCTACTACTATGGCAGTTGGAACTAT 21821 37 100.0 35 ..................................... ATAAAACGATGTCCGATAACTGGTACGTTTGGGAT 21749 37 100.0 37 ..................................... CTTACAGGCTATTATGCGATATACCTGGATGCCAAAG 21675 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 16 37 99.7 36 GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Left flank : TTGGATTGCCAATAAATTGCAAACTATCCAAACCACGCAAGTCTACAATCCAATATTCTGGAATGTTAAGAAAAGCGTATTCTTCCACCTTTCTTGCGTAATCATCTTGCCAATTTGTACTCACAACTTCAGCAACAAGCTTGATTGTACTGCCGTTACATATAATAGGTTCTTTTTGCCAGAGTGGTTCTTTACTAAGTTCTGCTTGATCTAAAACAATGACATCAGGGCGCAACGCTGTGGCTTCCGCAGCCGGCGGTTTGAGCAGGCAAGTTTTTGGAATTAGCCAATTGAAATTAGAACTAAAAATTTCGACATAGATTCTACCTGCAATACTACCAGCTACAGCTTCATGAGGGCCTGTAGGTTCCATGTCTCTGAGTTCTCCGTCAATTAGTTCATAACGTGTATTGTCACCATATTGGGCAATAAATTCTTGGAAAGTTAGTATTTTGGGTGGAGTGTAAGTCATGTGTATTTGAGTGTAGGAAATAGAATGT # Right flank : AGCGGTAGCCCGAAAGTCAATCAATATTAGGTTTTCAAGGTTCATTTGCGCGGATGGAGAAATCATAGCATAAGAATTTTGGATTGAGTAGGGTGTAAATGGCTGAAACCTAGTCTAGGCAAGGAGCGCGGATGGCTGGTCAGTAAATATTCCTCTAAAACTTTGTGCAGTAAGAAATTCAGCTATTTTTCCCTGAACTGATTTTTCAACACCTACCCATCCGCGCATTCAGCAAAGAAAATACTATCATCGCGGGGTTGTTCACCACCGATACGTTCAACCTTACCAAAACAGCAGGCGCACATAAAGTAAAAGCGAATACTATCAGTATCAGGTTTAATTAACTTGTTGAGGCGCGATCGCAATTTTGCATATTGAGTATCGGTAAGCTGGCACTCAAAGACGCTATACTGCACCCACTGCCCATACGACTTGAGAACTTTGTGGATTTTTGTACGGCGCTTGTCTTCTGAAATATCATAAGACACAACAACATTCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAATCCCTAATAGGGATTAATTGAAATTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 221632-224660 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000116.1 Chlorogloeopsis fritschii PCC 6912 contig00118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 221632 36 100.0 36 .................................... CTCAAAGCCATACTCTGAGTGGGTAGAGACACAATT 221704 36 100.0 35 .................................... GGCCTTTAAGCACTTCTACCTCTTCGCCGAAAATA 221775 36 100.0 42 .................................... GGTAGGAGCGGATGTGGCGCGTCTGCCGTGTGCTCGTCTTGA 221853 36 100.0 35 .................................... GAGCACCGCATAGCCGCCTGCCTCAAGCCCGGCGA 221924 36 100.0 43 .................................... CCGACGCGGCCAAGGCCGGCGCCGCCGCCAAGGCCTGCAAGAT 222003 36 100.0 36 .................................... TTCAGAGTTAATGATTTTTCTGTCTAATGTGATGAA 222075 36 100.0 34 .................................... GTTGAACAATTTCATGAGCTTTGCGATCGCTTCT 222145 36 100.0 37 .................................... CTCTAAGAGCAAAGGCAACTTCTTCAATAAATTGAAA 222218 36 100.0 36 .................................... ACTTAAAATATGCAGTAAACAATGAATCAAATCAGG 222290 36 100.0 39 .................................... ATACTGAGCATTGACAGTAGAAGGTAATTCAGTTGAATT 222365 36 100.0 36 .................................... TCATAAGGCTTTGTTGTCTGCATATTTTTTATTACT 222437 36 100.0 38 .................................... AGAAAATAATTTTTCTACTTCCCAATAACTTAAAGTAT 222511 36 100.0 37 .................................... ACCCAGAATACGACCATTACTGGCTTGTGTGTAACGG 222584 36 100.0 36 .................................... CTTGATACGTGCGCGGGGAGTTGTTAAGACTTTGCG 222656 36 100.0 40 .................................... GTTGGAGGATAGACAATGAATAAGCCAGGGCTAAGGGGTC 222732 36 100.0 39 .................................... CTCCCAGACAGGAGGCATGAACAGTGGGGTTTTCTTGCC 222807 36 100.0 34 .................................... AATGGGGAACCCATACTATGGGAACTAGAGCAGA 222877 36 100.0 39 .................................... TCTCTTAGAGCCTATCCGAAAACCCAATGTATGAGGAGG 222952 36 100.0 31 .................................... TTATTACTAGCTGCGTCCACCTCAAAAACAT 223019 36 100.0 36 .................................... CCAAAACAGTATTCATCTTCTGCACCACAGAACCAC 223091 36 100.0 36 .................................... GGAGAAGATGACCGCCTTGAGGATCTAGTGGAGTGT 223163 36 100.0 36 .................................... GTTTTTAGTGCCGCGCCCGCGTAAGATTGATCCGGA 223235 36 100.0 38 .................................... GTTGGTCAAAAGACTTTAGTTTAGTTCCTGTTTTTACA 223309 36 100.0 38 .................................... ATCAATTAATTCCTCTTCGTCTACCGCATCACGAGGAG 223383 36 100.0 36 .................................... TAGGATCCGCTGAGATTGAGAGGATGGTTGATGTTG 223455 36 100.0 36 .................................... GTGTTGTATGACTTCCAAATCGTACAACATCTAATA 223527 36 100.0 37 .................................... CTTAGAGAAATCTTTCTCCAGAATCTGAAACTTAATC 223600 36 100.0 41 .................................... AACAAGTGGGCATCTTGTTCATTACCTGGAGTTTTCATCAA 223677 36 100.0 39 .................................... GTGATAAATTCAGAGGAGCTTTTAGGATCAACCCACCTC 223752 36 100.0 35 .................................... TCAGCAGCTTCAGGAGAATAGCCAGAAAGACCTAA 223823 36 100.0 37 .................................... TCTATACCAGCTAAATAATAAGCTGACTCTAGAAACT 223896 36 100.0 39 .................................... TCGTGTTCGCTTGCAGATGCTTGTGCGTGTCTGAAAATT 223971 36 100.0 36 .................................... TTAACTATTTCATTGAAAGTTTTTAATTCTTCTTTG 224043 36 100.0 41 .................................... TTACTGGTGCAGACAACCCCTCAATTGCGTTTTGTGCTGTA 224120 36 100.0 37 .................................... TTCAATGAATGAGATTAATTACATGGATGAGTATGAG 224193 36 100.0 36 .................................... TTTGGATTAGCTTGAGCAGGTGCAATAGTAACCAAG 224265 36 100.0 40 .................................... ACATCTTTTGCTTACGGATCTTTTTGTCCGTTTTTCTGGT 224341 36 100.0 34 .................................... TTAGTTTCTATCTCTCTTATAAACTGTTCTCTTT 224411 36 97.2 35 ...................................T TCAATTGGGCGATCGCCAAATTTGAATAGCCATTT 224482 36 97.2 35 ...................................T ATTCAGACAAGTTACCGATAAATGTAATGCTGGTT 224553 36 97.2 36 ......................T............. TTGAATGATATGAATCAAGACCTTCTCTTAAATCTT 224625 36 97.2 0 ...................................G | ========== ====== ====== ====== ==================================== =========================================== ================== 42 36 99.7 37 GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Left flank : CACAGGTTTATCAGCCTTATCTGATTCGCTAATTTTATGCTTTTGTATGTGGTAGCTTATGATATTCCTTGCGATAAGCGGCGTAAAAAAGTCTCAGATTTGTTGGAAGGCTACGGAATTCGAGTACAGTACAGTGTTTTTGAATGTGTGTTGACAACTTCACAATATAATGAGTTACATCAGCGATTGCGGAAGAAAGTAAAGTTATCGGAGGATAAAATACGTTTTTATCCTTTGTCGGCTCACACTTTAAATCAAATTCAAGTTTGGGGTGGGCCTCCAGTGACAGAAATGCCTGGTTCAACTATTATTTAGCTGTTGCTGCGGCCGATCGCAAAAATGGCTGAAATAACGCAAATTCGTAGAATCGGCCGTTGGCTTGTCCCGTAAGGGTTTCATTCGTTTTTTGTTCTGATTTATTGGCAGTTATGGGTAGAAAAATCGGATCGGTCGCAAAGCGTCTCTGGACTCCTTACCGGGTAAGGGTTTAAGATAAAGGG # Right flank : GCTACCTGGCGAAGAAGCAGCGATCGCCGTGTACGAGTCAACGCAACTTCGCACTCGCGAAGGCTTTTTACTAGCGCAACTATGCATAATTACCCAAAAAAGTCAATAAATAAGAAAATATTTATCCAAACTTGAGCTACTTCGCTCAAAGCCTTACCACTAAAGGATATCCTCGACTTAAATAATTATTTCAGAATATATACTGTTATTAGACAAATATGAATATCAATTTATACAATAGCCAATGTATGGACTACAAGGAATTTCACCTGTGTCGGAAGCATACTGGCAAGCTAAAATCTGGGGTTTACTCCACGATCCTGTGCTGAAAGCTTTACATAATAATACTGGCCGAGGTAGCAATAGTTTCTGGCAACAACTAGAAGTAATGCAGAACTGGGTGAACAATGGCTGGAACCCAGAACAGTCTCAGGGTAAAATCTTGGAACATATTAAGCTGGCAGACTATATCTCTTCAGCAAGCGATCGCGGTGCCATTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTACTCGCTAGAGAAAATAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 739890-737515 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000116.1 Chlorogloeopsis fritschii PCC 6912 contig00118, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 739889 37 100.0 36 ..................................... AATTTCATACTGAAGATAAAGCTCTTACAGCAGTTC 739816 37 100.0 35 ..................................... GGATATTTGAATGACATCACCAGGGGAGACAAAAG 739744 37 100.0 36 ..................................... TTTCTTTGTTGCACTACGGGCTAGCAGGCTGCCATC 739671 37 100.0 41 ..................................... CCTTTGGGAATGCCCGTAAGCTCCGAGGCTTGCGGTGTCGT 739593 37 100.0 34 ..................................... ATCACCCCGCTCAACCCTGGCACGTGGGAGAGCG 739522 37 100.0 36 ..................................... AGATTTTAGGCATTTTAGGTGAGGAGGAGCAATAAA 739449 37 100.0 36 ..................................... CCAAGATGGATTGTAAATAGGAGTGGTGACTGGGGA 739376 37 100.0 34 ..................................... TCAAAAGAGAAATTTGACCAGCGCTGAGTAATGA 739305 37 100.0 38 ..................................... TTGAAGGCTCATCTTCCAGCAGAAGAAAAACACCCCTA 739230 37 100.0 35 ..................................... TGTCAACCTCCAAATCTGACCAGCTTTATAAAGAG 739158 37 100.0 35 ..................................... ATATTTAAAATTACACACCAAATCAATGAAATAGA 739086 37 100.0 44 ..................................... AGAAAATGGTGCGCCTACAAATTTACTCTTGGATTGTGGTGGAT 739005 37 100.0 34 ..................................... GGGGATCTCAACATCACACTAGTGCGTCCTTTAC 738934 37 100.0 35 ..................................... GGGAAGCCCTGGTAATAGAATTTTTAAGCCAGCGC 738862 37 100.0 38 ..................................... TGTTGCCCGTGCTGGAAGCGGCATTTTAGAAGCGGTAG 738787 37 100.0 39 ..................................... CAGTGAGAGATTTATGAGTTTTGAGTTGGATGATGGCGA 738711 37 100.0 42 ..................................... GCTATATGGCTGTACCAAATGGGAGAGGAAAAACAGAATCAG 738632 37 100.0 36 ..................................... GCTTCATTAATAATTCTTTGCTCATCTACTGGTTTC 738559 37 100.0 33 ..................................... CCGCAAGAATGGCACTTATGGGTACGAGTGGAC 738489 37 100.0 34 ..................................... TTAACAGCAAAATCTTTCCTCTGTCTACTTACCT 738418 37 100.0 37 ..................................... CCTGCTCGCTGCGCGTCATTATTGCATGGTCTGGGTG 738344 37 100.0 32 ..................................... AGGGGCGATCGCTCTATCTCTTGCCGGAGTTG 738275 37 100.0 38 ..................................... CTATAGGGAATACTAGCAAGACTTCATCTGTGTAGCTT 738200 37 100.0 34 ..................................... GGGAAGAGTGGGAAGAGATCTATCCTGAGAAATG 738129 37 100.0 34 ..................................... CTTAAACAAGCTGAGATATTTTTTGCTAGGGGTT 738058 37 100.0 35 ..................................... AACTCTCTCAAAATAGCGCGATCGCTCTTGCAGAG 737986 37 100.0 34 ..................................... TGTTGGAGTTTTAATTTTGCCTGGGCGATCGCCG 737915 37 100.0 34 ..................................... GAAGGAGCGATCGCTCCTAAACATTCAAAATCAC 737844 37 100.0 35 ..................................... ATCGGGGGTGATCGTAGGGTGATCGTGGGGTGAAG 737772 37 100.0 37 ..................................... GAGATACGGACGTTTCTATTGGCGAGAATAGTAGGAA 737698 37 100.0 35 ..................................... AAAACTCATCAACCAAGCGACAGTACCCTCCGGCA 737626 37 100.0 38 ..................................... ATCAATGTTTTTGACTTCTATTACTTGTGACTCTGTAA 737551 37 94.6 0 ................................A...A | ========== ====== ====== ====== ===================================== ============================================ ================== 33 37 99.8 36 GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Left flank : GGCGGCACTTTTGTTAGGATTGCAACCAGTAATGGCTATATCTTCTGGTGCTGCTTGCTCCTCGGCAACTACTGCACCATCCCATGTCCTCACAGCACTAGGACATTCAGAAAAGTTAGCTTATGCGTCAATACGGTTTGGGATTGGAAGATTTAATACTGCTGAGGAAATTGATCGCGTTGCCCAACATACCATTGCTACAATTGGGAGTTTACGGAAGCAGGCAATGATGGTTTAACATTGTCAGGCGATCGCACCATTTTCTTTTTTAAATGCGCGGATGGGTAGGTGTTGGAAAATCAGTTCACAAAAAAAGGGCTAGATTTCTTTGACTGCAAGGAGAAAAGAGCGATCGCACTTCTGAGCCATCCGCGCTCCTTGTCCAGACTGGGTTTGGGCTATTTTCACTCTACTCAATCCAAATTTTTCATGCTATGATTGCCTCATCCGCGCAAACGAACCTTGAAAACTTAATACTGATTGGCTTTTGGGTTGCCGCT # Right flank : CTAATCACATCCAAGCAAAGAATTTTACAAATTAATTTAGGCGATCGCTTGAGGACAAATATTGAGGATATCAGCTAGCTAAAAAATTACTTAAGTTTGTGCCAACTTTTCAATTAATAACAGCAAATGTTTCTCCAATTTGTCTAAAGCTTCCTGTGCTGAAGTTTTGTCAATATCGTGGATCAACCAATATTCCACAGCATCTAACCATTTAGGAAAACGCTCTAGAATCAGAGGTTGATGTTCCAATTCATCTAGGGCAATTATCAAATCCACAGTTTGAAAATCTTCTTCTAGAGCCTGCAAGGGCAAACGCTCGCCTTCTGGTAAAGTTACTCCCCGCTCTTTTAAAGCTTCAATTGTGTATTGAGAAATTGCCCCTATATTGTTTACACCCCTCTCCAGTGCTAAAGCGCGTGAAACAGCTTGCCATTTTAACCCCTGCTTGAGAGCCAAACAATTAAACAGATGTTCGGCGAAGCGACTGCGGTAATAATTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTAATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 3 754019-755881 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJLN01000116.1 Chlorogloeopsis fritschii PCC 6912 contig00118, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 754019 37 100.0 36 ..................................... AAAAAACAGATTCTGCACCTGATCTTGTAACCTGAT 754092 37 100.0 34 ..................................... TTTAGAGTCAAATTGACGAATTCCAGCACTTCGA 754163 37 100.0 36 ..................................... ACGTACCCCGCTCTAAAGAGACGCGGTTTCCAAGCT 754236 37 100.0 37 ..................................... AAAAAATGCCGCCGATTCCTCCTGAAACTATCGAAAA 754310 37 100.0 34 ..................................... ATCACCGAAGGGGCGAAAAAAGCCGGTGCTGGGC 754381 37 100.0 37 ..................................... CATCGGCAAACCCTCCTTCCATTGCTTCCTTCGCAGA 754455 37 100.0 34 ..................................... CTAAAAACAGAGTGAAAGCGAGAAATCGCTTGAG 754526 37 100.0 37 ..................................... TTTACAGGGACGCTTGCAATACAGCAATTCATAATTA 754600 37 100.0 38 ..................................... TTACCAAACCGAACATTTAAGCCCTTGGAATTCATTGT 754675 37 100.0 36 ..................................... GGGGCGGAAGCTGTGGACGGAAGCAGGGCTAGAACA 754748 37 100.0 37 ..................................... GTGGGATTAACCCCGATATTTCTCGTGTACGCTCGTG 754822 37 100.0 39 ..................................... AAGCTTAACTAGTTTATTTAATAAAGAACTAACAGCATT 754898 37 100.0 37 ..................................... GTAATGACTGGCACCATTGGCTTGATAGGGATAATCA 754972 37 100.0 36 ..................................... AGAGATTTATCAAGGTTTGAATCAGGAGCAGCGTAA 755045 37 100.0 35 ..................................... TCCATTCTTTAGGCATTATATGAACTCCATAAAGT 755117 37 100.0 34 ..................................... TAGCCACTAGCAACAGCCCGCATTTCTTTAACTT 755188 37 100.0 35 ..................................... ACGTCTACAACCAATTCCGCATTTGGATTTCTAAC 755260 37 100.0 34 ..................................... TTCTTCTCTCCAGTATCCTTGATATACAGCTTCC 755331 37 100.0 37 ..................................... ATACTTTGACACAATTTTTGTCAATAACGACATATTG 755405 37 100.0 42 ..................................... AGAAACCCTTATCAGCACCTGGAAAGACTTGCTGATACAGGA 755484 37 100.0 33 ..................................... ATCCCAAAGCTTTAGATATAGTTCACCGCAATG 755554 37 100.0 34 ..................................... TTTCTCCATCAGAGAAACAGTGCCAGTACTTTTG 755625 37 100.0 38 ..................................... CGGCTCAACCGATTTACTTGAATCGATGCTTGAGGAAG 755700 37 100.0 38 ..................................... TGGCATTTATGGCAGTTTTAGAAGGAATGCAAGCAAAA 755775 37 100.0 33 ..................................... CAGCAATCCTCCTGAATTTGCATATTCTTCCCT 755845 37 97.3 0 .........T........................... | ========== ====== ====== ====== ===================================== ========================================== ================== 26 37 99.9 36 GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Left flank : GAGTCGCTGTTATACAAATATCACGTTAAGAGGGCAATTTGTCGCCTTAACTACTTTTGAGGAGGGACGTTTGAAGAGGACAAGGCGCACCTGGTGCAAGGGGACAAGGGGAGGACACTTGCGTGCGGAGGTTCCCCGGAGCTTTCGGAGTCTCCGGCTCCGCTCCGTTGAGCAAAGTGTCCGTCGACAAGGAGACAAGGAGAGTAATAAACCAACTACTGTACGGGTAACAAATGACCAATGACTATTTACTTTTCTTTACTCTTTACTGAATGCGCGGATGGGTAGGTGTTGGAAAACCAGTTTAGGAAAAAATGGCTGGATTCCTTGTCATGTAAGGAGAAAAGAGCGATCGCACTTCTCAACCATCCGCGCTCTTTACTCAGACTGGGTTTGAGCGATTTTTACCCTACTCAATCCAAATTTTTCATGCTATGATTCCCTCATCCGCGCAAATAAACCTTGAAAATCTAATATTGATTGACTTTTGGGCTGCCGCG # Right flank : CTAAATCGGATGTGTCATGATTAGTTAGACCTTTATGGTTGAGGAGGGTTCGCACTACTTTGGACGGTGGGCGATCGCTCTTTTTGATAAAAAGCGTTGTGCCGTAAACACAACACTTGATCAAAGTTTTGATTTTTGTTGAATTTATATTGTTATTGCTGCTGATTTATTCGCTTTTGCAATTCAGCATCAAACTCCTCATCTGTACTGCAAAGCACGCCAGGACGAGAGCGAATTATACTTAAGTAGTGCTGGAATGCATTCTCATCATTAGGATTGCGCCGCACATATTCGCGCAATTCTTTTTCCGTCATTGATTCGTAATTTTGTCTAGTCATTCGATTATCACCTTCCCGTTTGGAAGCATTTCTATTTGTATTGTCTCTCCCACTAACATCACTATTCGGTTGGTGCGGCTATCAAACCGTACCAAGTTAATTGGTAGAAGTAGATTACTTACTCTCACGCTTCTTTGATAGAAGGATTTCAGTTGCTCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTCTTCTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //