Array 1 44122-42502 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQBZ01000009.1 Streptococcus agalactiae strain RBH04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 44121 36 100.0 30 .................................... CCACTGACAACTGGTTCTTGATTTTCGTTT 44055 36 100.0 30 .................................... CGCGTTATCTTGATCTAATCATTGAGAGCA 43989 36 100.0 30 .................................... CCCTGCACATTCGTTCGTCTTGTTCAGTTT 43923 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 43857 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 43791 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 43725 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 43659 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 43593 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 43527 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 43461 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 43395 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 43329 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 43263 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 43197 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 43131 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 43065 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 42999 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 42933 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 42867 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 42801 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 42735 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 42668 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 42602 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 42537 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //