Array 1 41-1107 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHT01000004.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318 SEEM5318_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 41 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 102 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 163 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 224 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 285 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 346 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 407 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 468 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 529 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 590 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 651 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 712 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 773 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 834 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 895 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 956 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1017 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1078 29 93.1 0 A...........T................ | A [1104] ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGATCCGATCCACATCAGCAGCCAGCTCTTTAAAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 288874-289939 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHT01000032.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318 SEEM5318_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 288874 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 288935 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 288996 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 289057 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 289118 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 289179 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 289240 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 289301 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 289362 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 289424 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 289485 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 289546 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 289607 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 289668 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 289729 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 289790 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 289851 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 289912 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 306075-306407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHHT01000032.1 Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035318 SEEM5318_47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 306075 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 306136 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 306197 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 306258 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 306319 29 100.0 31 ............................. AAACGAACATTAATAAAACCGGTTTAAGCGC 306379 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GAGTTGTTTTTCTTGCGGAGCAGGACGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //