Array 1 29050-26961 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZHZ01000002.1 Moraxella catarrhalis strain COPD_M8 NODE_2_length_310264_cov_33.4604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29049 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 28989 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 28929 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 28869 28 100.0 32 ............................ TGATTTCTTCACGACCGCACAGGTCGCTTAGA 28809 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 28749 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 28689 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 28628 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 28568 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 28508 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 28448 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 28388 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 28328 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 28268 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 28208 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 28148 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 28088 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 28028 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 27968 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 27907 27 96.4 0 ...........................- - Deletion [27881] 27881 21 75.0 32 -------..................... TGTCCAATCGCTTGTATTGCCTAGCTTATCCA 27828 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 27768 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 27708 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 27648 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 27588 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 27528 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 27468 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 27408 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 27348 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 27288 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 27228 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 27168 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 27108 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 27048 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 26988 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.1 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : TTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATACA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //