Array 1 360613-361969 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBL01000004.1 Listeria monocytogenes strain ICDC_LM1203 LM1203Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360613 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360679 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360745 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 360811 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 360877 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 360943 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 361009 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 361076 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 361142 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 361208 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361274 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361340 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361406 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361472 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361538 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361604 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361670 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361736 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 361802 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 361868 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 361934 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 17-253 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDBL01000013.1 Listeria monocytogenes strain ICDC_LM1203 LM1203Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 83 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 149 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 215 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [240,246,249] ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTCTCCAATGACAAGTG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //