Array 1 51749-56598 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDIX010000098.1 Pseudomonas lopnurensis strain AL-54 98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51749 29 100.0 32 ............................. ACGAGTCGAAGGCGCCCGGAAAGCTCGACGTT 51810 29 100.0 32 ............................. ATGGCGGCGCAACTCTGCCTTCGACCCAAAAA 51871 29 100.0 32 ............................. CACTCCATCCAGACAGCTTTGATGACCGGAGC 51932 29 100.0 32 ............................. GCGACAAGACGGTCAGCGATCTGGCCGCACTG 51993 29 100.0 32 ............................. GAGCTGGTCGAGGCCCGCGCCTACCTGGGCGC 52054 29 100.0 32 ............................. GTATGAACCGGTTGGTGGCTGTTGTCGGGCAA 52115 29 100.0 32 ............................. CTCAACGCCAAGGTGCGCGCCGACCTCAAGCA 52176 29 100.0 32 ............................. TGATCAATAGCGCAGGGGGCTGCGATTTTGAG 52237 29 100.0 32 ............................. CGCGCGTCGGTACTCCTTGACCATCTGGCGCG 52298 29 100.0 32 ............................. TACTCGCAGCAAGCCTCCCACAGCGCATCAGC 52359 29 100.0 32 ............................. GGCTTCGTAGTCATCGGCCAGGACGTAGAAAC 52420 29 100.0 32 ............................. AACCCGGACGGCACGCCCTACGCCCCACGCAA 52481 29 100.0 32 ............................. ATGGGAATCGTTTTCCTGGCGCATACCGGCAT 52542 29 100.0 32 ............................. GACGATAGTTCTGGTCGTGACGGCAATAATTC 52603 29 100.0 32 ............................. CGCAACAGTTTGCGCCCTATCTGCGCCCGACC 52664 29 100.0 32 ............................. GTCGCCGGCGCGCAGCTTGGCGATCTCGACCG 52725 29 100.0 32 ............................. TTCATGCCGGCCTGGGGGTGGATGCGGTAGAG 52786 29 100.0 32 ............................. GGCCTGGGCGGCGTTGAGGCGGGTTGTGTTGG 52847 29 100.0 32 ............................. TACGGCCGGATCACGCAGACAGGCGAACGAAC 52908 29 100.0 32 ............................. TTGTTGCTGTACAGGTCCGGCGCGCTGGTGAT 52969 29 100.0 32 ............................. ACAGCAATTAATTTTATAAATGCTTTGCCTGA 53030 29 100.0 32 ............................. CCCCTTCAGGTAGGCGGCATGGGCTCGCTTGT 53091 29 100.0 32 ............................. TTCGTCGCAATACTGGGCGATGCGGTACAGCG 53152 29 100.0 32 ............................. CCCCGCACGGGGCGGGGCTTCGGGTGGCGGCG 53213 29 100.0 32 ............................. TTCTCGACGCCATCCGGGCCGATCAGCGGCGT 53274 29 100.0 32 ............................. GTTTCGGCAGCGTCTGCCGGTTCCGCATCCTC 53335 29 100.0 32 ............................. ATGCTCGACAACGAAGAGCAGCGCGTCTTTGA 53396 29 100.0 32 ............................. ACTTGCAGGACGGTTTCTTTCGGCGGCACGAT 53457 29 100.0 32 ............................. CCTAATCACATCCGCGCGCGGCGGACCTTCGG 53518 29 100.0 32 ............................. CGGTACGAACTGAAAATCACGAAACGCTATGC 53579 29 100.0 32 ............................. ATATCGGCAGTTCGCTAAACGACCAGTTGCAA 53640 29 100.0 32 ............................. GATTTGCTCAATACAGCCGCGATGGTCATCGG 53701 29 100.0 32 ............................. GCCGGCGTCTGGTGCGATTTCTCGACCGGCGA 53762 29 100.0 32 ............................. GGCGAGCATTCCGTGGATGGATGCGGACGGGG 53823 29 100.0 32 ............................. CTTTCGTGACCGGCGCCGTCACCGCCGCCTGA 53884 29 100.0 32 ............................. GACCAGCTCATGCCACACCTCTTCCTCCTCGG 53945 29 100.0 32 ............................. CTTGCTGCTACGACGGAACCCTTTGATCCGAC 54006 29 100.0 32 ............................. GATTCGAGGCAAACGACGCGAGCTGCCGTGAG 54067 29 100.0 33 ............................. CGGCCTGGATGCTGTCGTCGGTGGCGCCGGCTC 54129 29 100.0 32 ............................. GCAGAGTTCGAGGCCGCCAGGGGCACCAACGC 54190 29 100.0 32 ............................. CTTGTAATTCTTCAGCAGGGCGATCATTGCAT 54251 29 100.0 32 ............................. CTGCACGTGCGACCCCGCTACGACGGCCTGCC 54312 29 100.0 32 ............................. GGTGGCCAATTTGGCCAGCCCCCTGGGGGTGA 54373 29 100.0 32 ............................. AGATAGCCATGGAATGCGATTTCGACACCCTC 54434 29 100.0 32 ............................. TTTTACCCGTTTGGCGAAGCGCCGGAGGGGGT 54495 29 100.0 32 ............................. CCAGGCTGAGTGGCGAGCCGGCGCGCATCGCG 54556 29 100.0 32 ............................. GCTGCTTTACTTTGGTGAGTGGGCGCCTTGAT 54617 29 100.0 32 ............................. GCCGGGCGATACGGCGGAACCTACGTCTGCAA 54678 29 100.0 32 ............................. CCGAGCCGCGGGCATGCAGTGACCGGGACGGG 54739 29 100.0 32 ............................. TTGGGTGGCGAAACCTACCAGTTCTACGCGCC 54800 29 100.0 32 ............................. TGTAAAGATGCAATAAGGCCGGCGAACAACAT 54861 29 100.0 32 ............................. CGCACACCGAGCTGGGCAGAGTTTTCGATGTT 54922 29 100.0 32 ............................. GCATCCGAACAGCTCGAGCAGTCCTACGCCAC 54983 29 100.0 32 ............................. GGCTGGGTCGCCCAGGCGTTGTCCCTCAAGGA 55044 29 100.0 32 ............................. GGAAAGCGCGTGAACAGGCCGGAGCTGGCAGG 55105 29 100.0 32 ............................. CCGCGCAGGCTCACGTCGTCGGTGGTTTTCAG 55166 29 100.0 32 ............................. TTTATGGCTGGCCTGGAGCAACAAATGGTGAC 55227 29 100.0 32 ............................. TAACAAGCAGTCGCAGAGCGTCAGTCTTCCCG 55288 29 100.0 32 ............................. ACCAGGGAGGCGAAGTACGGGACCGAGCTCGA 55349 29 100.0 32 ............................. CTTGTTCGTTTAACTGGTGCTGATGGCTTCGC 55410 29 100.0 32 ............................. CGATCATCGCGGCGATGCCGGGCATGCTCGAT 55471 29 100.0 32 ............................. ACGGTGTTGCGGATGTTCTCTTTGCGTTGGTA 55532 29 100.0 32 ............................. CGCAAGCGGCAGATGTTTACCAAGCTGCGCAC 55593 29 100.0 32 ............................. ATGGCAGAGGAAACGATGGGCGGCAGCCGCAT 55654 29 100.0 32 ............................. TAGCCGGCCCTGCCCTCTGCCGTCGATTCGAT 55715 29 100.0 32 ............................. CGACGAGAGCGTTCCAGTGATGCGGCTGCATC 55776 29 100.0 32 ............................. TAGGAGTTACGGCCTGAATGCCATCCCAGTGC 55837 29 100.0 32 ............................. GCTTCGGCCATTTCGTTGAGATCGGACATCTA 55898 29 100.0 32 ............................. GCTTCGGCCATTTCGTTGAGATCGGACATCTA 55959 29 100.0 32 ............................. TCGTTCTTCGGTGCGGCTGTCGATATCTTCCG 56020 29 100.0 32 ............................. CTTCCGTGGCGCTGGCATGGACGGCCCTGTCA 56081 29 96.6 32 .........A................... TACGCACGCGATATTGGGTGTTCAGTACCGTT 56142 29 100.0 32 ............................. ACCACCATCACCGAGATCACCCTGCGCAAGCC 56203 29 100.0 32 ............................. CCCGCGCGGGGCGGGCTGTCAGGGTTCGGGAT 56264 29 100.0 32 ............................. GCCTGCCGTACTACGCCAAGTTGGCTCCGATG 56325 29 100.0 32 ............................. GCAGCCAACCCGCCACCACCGAAGCCTGCACC 56386 29 100.0 32 ............................. TCGTCGACGTTGAGCCAGTCCTGGCTGGAGGC 56447 29 100.0 32 ............................. GCGCGCTTCTCCCAGGTGTTGGATTCGTCTAC 56508 29 100.0 32 ............................. CGCTCAACGGTCGCGATGGCTGCTGGCTGGTA 56569 29 86.2 0 ........................G.TGA | C [56574] ========== ====== ====== ====== ============================= ================================= ================== 80 29 99.8 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCTACCATCGAAGAGGTGCTGTCCGCCGGCGGCATCTCGCCACCCGAAGCACCACCCGAATCCGTACCGCCTGCCATCCCCAACCCTGAAAGCATCGGCGAAGCCGGGCACAGGACGCAGTGATGAGCTTCCTCGTCGTGGTCACCGAAAACGTACCGCCGCGCCTGCGTGGCCGTATGGCCATCTGGCTGCTGGAGGTTCGTGCCGGGGTTTACATAGGCGATGTCTCCAAACGCACCCGCGAAATGATCTGGGAACAACTGCGCGAGGGGCACGAGGACGGCAACGTGGTCATGGCCTGGGCCAGCAACCATGAGTCCGGCTACGAATTCCAGACCCTGGGGCCTAACCGCCGCTTACCCGTGAAATTCGATGGTCTGCGTCTGGTCGCCTTCCATCCGCTGGAAAATCCCGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCAGCCAATTTTTCCCTTGAAGATTAATTGGTTACGCTAAGT # Right flank : AACAGCGCCTTGCTGGCGTAGCGTGCTGCCGCTTCTGGCCGGGCGCGGCTCAAGTTTGCACGGCACCTGGCCGACAGCCTGGCGTCAGTCAGGAGTCCATGATGGTGCATCCCGTATCCGCTTCCGCCGCCTTTGCGCGCCCTGTCTCGCGTACCGGCGTCCCGTCCGGGGCTGCGGACGAGGCCGCGCAAGAGGCGCCCGAGTCGTCGACCCGGGTATCGTTCAGCGAGCGTCTGCTCTCGGCCGGCAAGGCTACCCGCTCGTTGTCGAATGCACTGCGCGAGGCCGACAACTCGAAAAAGGAAGCGGCCCGCCGGCGCATCGAAGAGATCAAGCAACGCATCAAGATGCTGAGAATGTTGGCAAGCGGTGGGCTGGTGTCCAAGGGCGTCCTGCGGGAGATCCGCCAGTTGGCGCAGGCGCTCGGCCAGGCCGCCAAGGTGCTCGCCGGATCGGGTGGTGCCGCAGGTCATGCGAGTAGCGGAGAAAACACGGCGTCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //