Array 1 1-431 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYI01000101.1 Loigolactobacillus rennini DSM 20253 NODE_199, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1 32 100.0 34 ................................ TGACGAGTCAGCAGAAGCAATGTTTTCTAACCGT 67 32 100.0 36 ................................ CAAACTAAAGATAATTTAAGAGCCGAAATGTCTAAA 135 32 100.0 34 ................................ GAACGGTGTTGTTCCAACTAACATGATGGTGCAA 201 32 100.0 33 ................................ TGATAAAACTAAGTTTGTAGGTGTAAAATTATT 266 32 100.0 36 ................................ GACACCCCAGGTAAAACCATCGAAATTGATCATTAC 334 32 100.0 34 ................................ AGCAAGACGTGTTACCGGAGCTGTCAAGTGTCAT 400 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 100.0 35 GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1019-527 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYI01000102.1 Loigolactobacillus rennini DSM 20253 NODE_200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1018 32 100.0 33 ................................ GATTACTTAGTAAAGCAGATGATTGGCACTGGT 953 32 100.0 34 ................................ ATGGCACCTAACGACTGTTTGCCATCATAGCCAC 887 32 100.0 33 ................................ CAAAACTCTGTGCTCTGGGCATATTGGTGGTAA 822 32 100.0 33 ................................ GGATCCTGATTAATTGCTTTTGCAAAAACAGCC 757 32 100.0 33 ................................ CATCAAGTAGCTTTTTCTTACTGATTGACTTTG 692 32 100.0 36 ................................ GGAAATTTTATCCGAAATAAAAAAACACCAGCGGGT 624 32 100.0 34 ................................ AAAACCGTGGAGCGGTTAATTTCTGGGGTAAAGG 558 32 93.8 0 ...........................T...C | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 99.2 34 GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Left flank : GTTACCGGAGCTGTCAAGTGTCA # Right flank : TGATAGTGATTTAGCAGGTGCCCATTACTGGTTTTCCGTCAATGCATAATGCATACTAGCCAGGTAACGTACCAGGCAGATAAGTGGCTTTATTATGATGTGACTACTTACAGCGGACAAGCTGGATTGCCAGATTATTATCAAATTCATCGCGACCAGAGCAAGTAAACTGGCTAACTACGGTGCCATCGTTAACAGTGAACACTACCAATTTATTCATGTTTATTTGGAGTAAATCAGCAGACTACTGGTTATGTATTATGAGTTGTTGAATAATACATAAAAATAGGGACAATTCACATTAGTGAGTTGTCCTTATTTCGTTATTACTAGACATTTAATTAGTTAAAGGTTATTAAAATTCAGCTGCATTTGCCAATGTCCGCATAAATTCTAACCGGCGGATGTGGCGGGGGACGAATTGCCGGATTTCGTCATCATTAAAACCAATTTGTACTTTGTGCGCATCCACAATAATCGGCCGCCGCAACAGGCGCGGT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54032-53793 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYI01000038.1 Loigolactobacillus rennini DSM 20253 NODE_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 54031 33 100.0 36 ................................. AGAAAGCTTAATTAGTGATCTAGTCAGTATTATTTT 53962 33 100.0 35 ................................. TCATAGGTCTTTTCCTGTTTTTGAGCATAATCATC 53894 33 100.0 35 ................................. GCCGTACCGCAAGTAACGTTTTATCAGTGTCACCC 53826 33 97.0 0 ............................A.... | T [53807] ========== ====== ====== ====== ================================= ==================================== ================== 4 33 99.2 36 GTCGCACTCTGTATGGAGTGCGTGAATTGAAAT # Left flank : CCGAATACAGTGGCGAAATATTTTCAAGTGATTGATTCAGAAACCACGGATGTCATTGTACAATATGATAAAGATAGTGAAAAACTTGTTAGTGAATTATTGTCAGAAAAAAGCAAATTTTCAGATATTTCACAACTTTTAAAACAAGCACAGCAATATTGCGTTTCTGTTTACGGCGATCTTAAAAATGCCAATAGTCAATTAGGACAATTGTATGCTTCAGGGAGTATTAAATATTATCCAGAGCAGGATATTTATGTTGCTGAAGCAGGCGCTTATAGTGAGGATTATGGTTTGGGAAAGGGGAAATTAGATTTATTAGCGTATTAAATTAGGACATTAGTGCGAACCGGAAGTGCACATGAATTTTCCGGTCGTTTCGCACCAGTTTTACGTCTGAAAATATTATTTTTGATTTTATTTATAATGGTAAGATAAATAAATTAAGTACTACCGTCAAAATATAGTATGCTCAAGGCATCACTGTACTATATTTTGCG # Right flank : TGGCATACTGATACTAGGAACATGTTGAAGTGCTAAATATTGCAATTTAACATGTTTTTTGCATTGAAGCGTTTACATAAGTGATTAGTGCTGCTAAGATAAAAATGAATATACTAAATAAAAGAAATGAAAAGTAAATTATGGCGTATTCTGAAGCAGATTTTTTACTGATATCAGGAATACAGCATTTTCGCTTTTGTCAACGACAATGGTCATTAATACATGTTGAACAGGCCTGGCAAGATAACCTGTTAACATTTGATGGCCAACTTTTACATACTAAAGCAGATCAACCAGAGATTCGTGAAAAAAGAAAAGACAAATTATTGGTACGAGCCTTACCAATACATTCGCGAGAATTAGGTTTGACAGGCATTTGTGATGTTGTGGAATTTATTGAAACACCTTCTGGTATTAAATTATTTGGTAGTTCAAAATATTATCAACCACGCCCAATTGAATACAAACACGGTCATAAAAAATATGATTTATCGGATTCA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 13751-14317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYI01000004.1 Loigolactobacillus rennini DSM 20253 NODE_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 13751 32 100.0 34 ................................ AGCATTGACACTGTAGCTGGAAAATATCTGGTTG 13817 32 100.0 36 ................................ TTAAATGAAATTTTTGCTAACGACAAAGACTTAATT 13885 32 100.0 33 ................................ AAAAGCTGCAACCGAAGCCGTATTGTCATACGT 13950 32 100.0 34 ................................ TTATGACGATATTGCGTCATTGCCAAAAGCAGTT 14016 32 100.0 36 ................................ AATCAATTCATTTATGTGTGCAATGAAATTCGTCCA 14084 32 100.0 34 ................................ GACAAATATCGTTAACCAGGTAATGGTTTACGGT 14150 32 100.0 36 ................................ AATCAAATTGCCGTATAGCCTATCAGCGACCACCCC 14218 32 100.0 36 ................................ CACTGTTGGCATCCAGTCAACTAATGCAAAATTTAA 14286 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 9 32 100.0 36 GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Left flank : CGCCATTGCCCAAAAAATCGCCGCACAAAAGAAAAATCACCGCATGTCTGCCCAAGCCGTGGGTGGCGCAGTGGGCCACAACCACCTTTCAATTTTCATTCCTTGTCACCGTGTTATCGGCAATCACGGCAATTTAACCGGTTATGGTGGTGGCTTGCCGCGGAAAGTACGTTTATTGAAACTTGAAGGTGTAGATTTAGGGGCGTTTTATGTGCCTAAAAAGTAGCACCACGTTAAGTAAGATGAGCTTGCTTAAGCTAGTAATGATAGACAATTTATTTTTACTGGACAATCATTTATAATAAAAGTGATAACTACGTAAGATAAGACTTAAATTTTAAAGTGCGAATCGGAAGTGCACATACTTTTTCCGGGTGTTTCGCACCATTTTTCAAGCAGAATTGTGTGATTTTAGACTATAAATTTTTAACTGTTTACTTAGTTATCAATGTTATACCCCAAATATTGTTTTGCTTTATGTGGTAACACAATATCTTGCG # Right flank : TGACGAGTCAGCAGAAGCAATGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 45849-45018 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYI01000005.1 Loigolactobacillus rennini DSM 20253 NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 45848 36 100.0 30 .................................... ACTTAAAAATGAAAGGAAATGGTAAAAAAA 45782 36 100.0 30 .................................... ATTATCAGAAATACGAAAAGCTGATTTAGT 45716 36 100.0 30 .................................... ATTTGATGTGACAGCAAAGTCAACGTCTGA 45650 36 100.0 30 .................................... AAAAGAATCGAGAAAAGATTGACCCATTAA 45584 36 100.0 30 .................................... AATGGGCTTTAACCGAGCTAAATATTTGTT 45518 36 100.0 30 .................................... CGGCATTCCGCAACCTGACCCGGGCTTTTT 45452 36 100.0 30 .................................... AAAAAACACTAAGAAAATTGCTGTCCGTAA 45386 36 100.0 30 .................................... AAATTGTACAAACTGCTCCCGCTTTAACCG 45320 36 97.2 30 ...............T.................... TGCCGTAAACAAGGGTCGGATTACCAGAGT 45254 36 100.0 30 .................................... GGGAGACACTAAAACTAAACAGGTTACTCG 45188 36 97.2 30 ..................T................. CGTCTAATTATACAAATTGGGCCCAGCACA 45122 36 97.2 30 ..................T................. TACGACAATCCCAACATGTTAGACGATGTC 45056 36 88.9 0 ..................T.......A..A.....A | TTA [45022] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.5 30 GTTTTAGAAGAGTATCAAATCAATGAGTTTATCAAC # Left flank : AACAGCAGATCTAAACCAACTATTTCAAAAACAATTACTTAAGAAAATTTCAAATGATTTAAACGATACCCAAAGACAAACACTGGTTCAGTTGGATAATCAGATCCGTACCGCAATTTCAGATACCATTTTAATGTACGATTTATCGCTTACCGTCGGACAAGAATGGAACATCAGTAAATTGCTGAAATACATTAGCGTGAAATTTTTCAATAGCATCCAAGCTGATCCCTATGGTATAATAGAGAATATAGTAAAGACTGTTTTAGAACTCAATAATAATAAAATAATTATTTTGATGAACGTTTCGCATTATCTTAGTATCAGCCAGTTCAATGAATTAGTAAGATTAATTGCGTCATTAGATGTGAAACTCTTTATCATCGAATTCTTAGAAAAGGCAATTCCACAGAAGTATCAAGATTGCCGGTATTATCACATTGATCGTGACTACGTTGAATGGCGTTATGATTAAATGAAAAATAACTGAGAATTTGGCG # Right flank : ATATCCAATGATAAAAGAAGCCTGCAATTAGCGCTCAAATAAATCGTTAACTGTAGGTTTTTTATATGCTCTATTCTTCTAGAAATCAGTCCAGTCTTCATCCTTAACTGCCTGCTTCTGTTGTGGTAAATCTTTACGTTTGATTTTTAGCGTTCTCTCTTTTTGAAAAACCTGGTGAATCTTTGCTTTTTTAACATCACGCTTGTGTAAGTAATGAGCAATCATAAATGAGGTTGATTCGCTAGGTGTTTGCTCTCCTATTTCATCCTTCTGATTGGTAAATAATATCATTGGCGGAAATGGGATTAAAAAAGGCAAGAAGCCAGTGAACCATAAAAAAGATGCAGAATCACCTGATTCTTTTGCCCAGTGTAACCCTATAACAGTCATAAGTAGTAAAACAATAGTTATCACAGCTGTTATTTTTAATTTAAATGCCTTAACTCGATACTCTGACGGCATTTTAATCTGCTTTTCTTTTGGTTGTGGTTTAACATAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGAGTATCAAATCAATGAGTTTATCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGAGTGTTAAATCAATGAGTTTAGAACC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //