Array 1 8682-5409 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOSG01000005.1 Listeria monocytogenes strain CFSAN028805 AFX66_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 8681 36 100.0 30 .................................... CGTAAGTCAACTTTATAAGCGTCAGCAGTT 8615 36 100.0 30 .................................... CTTATCCACAATCGGTAGCGGTGTCGCGTC 8549 36 100.0 30 .................................... GTTAAATTGAATGATAAAGGCAGTCAAGCT 8483 36 100.0 30 .................................... ATCGTCTTGATTGGAGCTCAATCAAAGGCA 8417 36 100.0 30 .................................... CCGATTAGTAATGTACCTAACATTCCCAAC 8351 36 100.0 30 .................................... AACAAAAGCATTCAAAGCAAATGCAAAAGA 8285 36 100.0 30 .................................... CTACCTTGTAGTTTTCCATTGTAAACACAT 8219 36 100.0 30 .................................... AGCGAAAAGCATTACATTTGATGAAATCCC 8153 36 100.0 30 .................................... TAGCGTTAGTAGTATTGAGTGTTGGGACTT 8087 36 100.0 30 .................................... GACAGCTCCGTTTGGAGGAACTGAATTTAC 8021 36 100.0 30 .................................... CAGAACACAATGGTTACTGACTCGGCGCTT 7955 36 100.0 30 .................................... TACGACCACTTAAAAGTGAGGGGATATATT 7889 36 100.0 30 .................................... GATGGGAATTTCTTGCGCAAACGGTCTGCA 7823 36 100.0 30 .................................... CTCATTATACTCAGGGCACTATCCAACCTT 7757 36 100.0 30 .................................... AGTCAGCAAGTCCCCCGGTTCGGTTCCACA 7691 36 100.0 30 .................................... GAAACACACCATTGATATTGCTCTAATGAG 7625 36 100.0 30 .................................... TAATGCTTGAATGAATGGGTCTGTGGCACT 7559 36 100.0 30 .................................... TATCGTAAAACGCAGAGTGAACCGCTCCAG 7493 36 100.0 30 .................................... GAACTTCTTCACCATCTTTCATTTCTGTTT 7427 36 100.0 30 .................................... TCCTTCTCCTTCTCAAAACCACAAAACACG 7361 36 100.0 30 .................................... AGCATTTAAGACTGCTTGACCATAGTCTTT 7295 36 100.0 30 .................................... TTATATGATTTTCATTAAGACTGCTCCAAC 7229 36 100.0 30 .................................... TTGTGCTTATAAATTAATAGCCGTAATGCT 7163 36 100.0 30 .................................... TTTCACATTGTCAATCTCATATACTAGATA 7097 36 100.0 30 .................................... TTATGAAAGGTGCCAAAGACGTTATTGGCG 7031 36 100.0 30 .................................... AAATGCCGATGTAATGTTTATGTTGGATGA 6965 36 100.0 30 .................................... ACCTCTTGAAGCCATTTCCATGTAAGCTCC 6899 36 100.0 30 .................................... TCTTGAAAATGCCTATAAAGTCGCGCCGTG 6833 36 100.0 30 .................................... TATTGATAACAGCTTGCCGACGAAATTATT 6767 36 100.0 30 .................................... TGAACAAAGATATCTTCCTTGATGCTGATA 6701 36 100.0 30 .................................... TGACGAAGGTTTGAGTTTGGGAGACGGTGA 6635 36 100.0 30 .................................... TTGTCATCATGTAAACATCACTGATTAGTT 6569 36 100.0 30 .................................... ACGGCTCTGGATCGCTTGCAACGATGATTT 6503 36 100.0 30 .................................... ATGTAATTTACTTAGCATTTCATTTAGTGC 6437 36 100.0 30 .................................... CGGTAATGCTACAGAAGCCGCTCGTCTAGC 6371 36 100.0 30 .................................... CAACTACGAAGAAATGATTACTACACCTGA 6305 36 100.0 30 .................................... GATGGGGGGGTTGGTTTTCACTGAAATATA 6239 36 100.0 30 .................................... TCTAATCCGTTACAAAGTTGCGAACGCTCT 6173 36 100.0 30 .................................... CTAGGTCTAGACGATTGGATATTTCGCTAA 6107 36 100.0 30 .................................... CAAACTAAATCTTTTTAACAAACTTTGTGT 6041 36 100.0 30 .................................... TTATCCAGCGTGTCACAATAAGATACAATC 5975 36 100.0 30 .................................... TTCTGAATGTAACCGTAGCATTCGATAAAT 5909 36 100.0 30 .................................... GAGGTTCGTTGGTGTTATTCCGGTTTGGGA 5843 36 100.0 30 .................................... TTGTGCTTATAAATTAATAGCCGTAATGCT 5777 36 100.0 30 .................................... TTATGAAAGGTGCCAAAGACGTTATTGGCG 5711 36 100.0 30 .................................... TGTTTCCTTAACCACTTGTTTGTACTTGGA 5645 36 100.0 30 .................................... AGCTCCATTTAGTCATTCCCCTTTCTGATT 5579 36 100.0 30 .................................... TTGGTATTAGTAAAGGTCTGATGAAGCAGG 5513 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5447 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5412,5415,5420] ========== ====== ====== ====== ==================================== ============================== ================== 50 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATATGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAACAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //