Array 1 379967-379760 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT853882.1 Xanthomonas fragariae strain PD885 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379966 28 96.4 32 ...............C............ TTACCAAGCAGGTGCACCAGAACTGCCCGCGT 379906 28 100.0 32 ............................ CATTTGATTTTAATGGACTCAACAAGCCTCTC 379846 28 96.4 31 .............C.............. TATCGTCGCGCCACGCATAGCAGACCGGTGC 379787 28 82.1 0 A..........TC........G..T... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 93.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : GTCCAAGCAAGCGCCCATCTTCCTTGGCGCGCTCACTGTTGGGCGAGCACAACCAGGCGTAATAGCCCGACCGGTTGACCCGCAATACCCGGCACATCGCACACACCCTGAATTCCCCACAGTGGGCTTGCATGAAGGCGTACTTTGCCCTTACCCCTTGGCAAAGTACGCGGCGGCCTTTTTTAGGATGTCGCGCTCCTCGGTCACTCGACGCAACTCTGCCTTCAGCCGCCGAACCTCGGCGCTCTGGTCCACCTCGGCGCGCTGCACCACGCCAGGCTTGCCGAACTTGCGCAGCCAGGCGTAGAGGCTGTGCGTGGTGACACCCAGTCGCTCCGCGACTTCTGCCACCTTGAAACCACGATTGGTCACTTGCCGGACCGCCTCGATCTTGAATTCATCCGTATACCGCTTGCTGCTCATGGACACCTCCGAATTGACCATTTTCCATGGCCTTGAGATGTCTAGGAAACCCTGGGCGTATCATGTGTAGTAGTTAG # Right flank : TGCGACCGGCCCGTCCACTCTCGCGCTGTATTTGCCACGACTGTCGCGTCTCATGGACAGGCGACCTGCAGTGCTCCATGCATCGGCATGTGCTGTTGAACAGGTGACGTTAACCGCGCGCGCATTGGAAAGGCATGTTTGCGCAGGCGTAGCAGTGTACGACGCGTGACGTCGTCGACGCCTTCAACAGACGTGCAACGCAGGGGAAAACCGGCGGAAGATGCACTGCGATAAAGCCACGCCGCGCGCATCACCCGCGCGTGCACTCACTTGCGCCAGTAAAACCCCAGGAACATCGCCACCGCCGATTCGGCCATCTGCGTCTGTTGCTCCGGCGACAGCGGCGGCTGGCCCGTGGCGAGCTGCGGCCAGAACGCGAAGCCCTGCACCAACGCCTGCAGCTGCTGCGCGGCGAAGTGCGGCTCCACGCTTGCGAGCCGCCCGTCGGCCAACGCAACGCGTCGCCAGGTGGTGGTTCCTTCCTCCTTGCTGCCCAACGG # Questionable array : NO Score: 3.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 633237-630749 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT853882.1 Xanthomonas fragariae strain PD885 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 633236 28 100.0 32 ............................ ACACTAGGCCCGTAGTGAGACCGGCGAGGTCG 633176 28 100.0 32 ............................ AACGTCTCTCCTCGTATACTATCGAATGTGTT 633116 28 100.0 32 ............................ TTACGGTCATGTCCTGGATATGGTGTCCAGGA 633056 28 100.0 32 ............................ AGCTTCGAGGAACAAATCTGATCGCTGCAACG 632996 28 100.0 32 ............................ AATCCGACTATCTTTAAGCATAGTCTGTCCGG 632936 28 100.0 32 ............................ TGATGGTTGCGGAAAATAAAGGTCTGATCCTT 632876 28 100.0 32 ............................ TACGGGCATCACGGCGAAAGGCACTCAGCGAA 632816 28 100.0 32 ............................ AAGGAGCAGTGATAAACAATCAGGGTACCGCC 632756 28 100.0 32 ............................ TTGGTCGGCCCAGACAGCATTATTCATCATGA 632696 28 100.0 32 ............................ CAAATTAAGAAGTGGGATACCGGAGTAGTAGA 632636 28 100.0 32 ............................ TACTGTTACTGTGGGTTGGCCCGCACTCCAGT 632576 28 100.0 32 ............................ ATCCGTCCGGAGCACCACCGGAGTAGGTCCCC 632516 28 100.0 32 ............................ CGCACGTGCTGGCGGAGAAAGACTGCTGCAAG 632456 28 100.0 32 ............................ GAGCTGTGTGCACCAAAGTTGCCCTCCTCGGG 632396 28 100.0 32 ............................ GTACGGCAGCACCCGCTTTAGCTGTGCTGAGT 632336 28 100.0 32 ............................ ACGACCGCCTCATGGCTTCCTGCGTGCAGCCC 632276 28 100.0 32 ............................ GACGATCTTCTGGGCAAATACCCGCTGAAACT 632216 28 100.0 32 ............................ TGCGTGCAGCCCTAGCGCGACTAGGCTCAGCA 632156 28 100.0 32 ............................ TGCTATGGCAGAACGGCTCAGAGTTTCGTACT 632096 28 100.0 32 ............................ CAGCGCTACCAAGATGCAAGCTACCGACATGA 632036 28 100.0 32 ............................ AAAACCATTTGTGCCCGTAGAGCTTTCCATCC 631976 28 96.4 32 T........................... TCGACGACGCCGAAGAGGTTCGCCAGTGGTCG 631916 28 100.0 32 ............................ ACCAACGACGGGTGTCGCGCGCACCTGGGTAG 631856 28 96.4 32 .....A...................... ACCTACGAGCCCCAGCCGTATGCAGAGGTTTC 631796 28 100.0 32 ............................ AGCCGCACCCTTGCAGACTGTACTCTCTGCAT 631736 28 100.0 32 ............................ TCCACGTCCTCTTGAACAACATGTTCAGGGAG 631676 28 100.0 32 ............................ TGCAGCAGGGGGAGGAACTTCCGTATCAAGAC 631616 28 100.0 32 ............................ TGTAGGAGCAGACGGGGACAATACGCAAGCAG 631556 28 100.0 32 ............................ ATTGCATACAAAGACGGCATCATCGCCTCGGA 631496 28 100.0 32 ............................ TTTGCGCCACACCGAAACCGAATTCCGCGACA 631436 28 100.0 32 ............................ TAAGCAGCGCGTTAAGAATACATTCGTGACCT 631376 28 100.0 32 ............................ TAGATGCCCTGATTGCAGAAGTCAGGACCTCT 631316 28 100.0 32 ............................ TCTATGGGGAAATCATTTTCGAAAAGTACATC 631256 28 100.0 32 ............................ TCCCAGGGCAGTCGGTGTCGCACCTTGCTTCG 631196 28 100.0 32 ............................ TTAAACCAAAACTCATGCCAGTCGTAGCGACT 631136 28 100.0 32 ............................ TGGCTGAAATTTACAAAGGGAGCAGTAACTCG 631076 28 100.0 32 ............................ GTGTCGGGATCTTCCTCAAATCTTGCAGGAGA 631016 28 100.0 32 ............................ TACTGCCACAAGAACCCCGGGATCGAGGATCT 630956 28 100.0 32 ............................ TGATGCACTCGGCATACGCGCCACCGGTGGAC 630896 28 96.4 32 ..........................C. GGGATGTCCGGATGCTGGCAGTGACGCGTTGT 630836 28 100.0 32 ............................ ACATCAAAGGCTGCTACTGAAGCTCTGGATGA 630776 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.7 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : TTGCAGATGTTGATGGCGAGACCCTGGCTGCACGGGATGCTCGATCACCTGGCGGTATCGGCCATTCTCGCTGCCCCTGCCGACACCCAACATCGGCACGTCACCAGGGTGCAGGCCAAGAGCAGTCCCTCGCGCCTGCGCCGTCGTGCCATGCGCCGTCATGGGATCGATGCAGAGACAGCCGCCCAACGCATCCCGGATGCGGCAGCCGAACAGCTGCCACTGCCGTTCGTCGTACTGGGCAGCCGCAGCACGGGACAGGCGTCATTCCCGCTGTTCATCCGTCACGGCCCCCTGCTATCGGAGCCGACGAACGGCAGCTTCAACAGCTATGGCCTGAGCCAGGAAGCGACCGTGCCCTGGTTTTGACCCTTTTTCCCGGACAGAACAAAGGCTGCTTTAGAATCAACCACTTGGCAGGCACCTTGTTTCAAAGGGTGCCTGCCCTGTTTTGTCGGTATTTCTTTTATTTATCAATGGATTGATGAAGATCTGATCTT # Right flank : AATTCAAGGATGGCCATACGGGTTGGATTGACGTTTGATACGCCCAGGGTTCCGTAGACCCTCAAGACCCTCGTTGCGCGTAGCGCCGTTCAAACTCTACAGGGGACAGGTCGCCAGTTGAACCGTGGCGGCGGTTGGGGTTGTAGAACATCTCGATGTAGTCGAATACCTCGGCGCGAGCGGCGTCCTTGGTGGAATAGGTCCGCCGCCTGATCCGCTCGCGTTTGAGCAGTCCGAAGAAGCTCTCCACGGGTGCGTTGTCGTGGCAGTTGCCACGCCGACTCATGCTGCACACCACGCCATGGGACACCAGGAAACTGCGCCAGTCATCGCTGGTGTAGACAGACCCTTGGTCCGAATGAACCAAGCAACCAGCGTTGGGTTTGCGCCGCCACACCGCAGACAACAAGGCCTGCACGACCAACTCGGTGTCGGCCCGATCGCGCATCGCCCAGCCGACAACCTGCCGGGAAAACAGATCGATCACAACAGCCAAGTAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //