Array 1 2977209-2976980 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046653.1 Bacillus sp. ms-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 2977208 32 100.0 34 ................................ TGCTTCCTGTTCTCTATCCACATCAAATGCTTCC 2977142 32 100.0 34 ................................ ATCTGATCGATCTCAAGGGTGGTATCGAGCTAGG 2977076 32 100.0 33 ................................ TTTCCAACGTGGTACGAGGCGACACTCAAAAAG 2977011 32 78.1 0 .................C..A.AC..CAC... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TGAGTGCGTGGATTGAAATACGAAAGAGAGAGTAACTGGTTCAGCTCACATTGTCGCACTCTATATGAGTACATGTATTGAAATAATCGTGTTAAGTAGATTAAATCTATTAATTATGTCGCACTTGATATGAGCATGTGAATTAAGATCCTCGTCAATAGGTAGCTAAAAAGGAATATTAACAATTCCGCATGATATAAGTGTTAAAAACATAACGCTTTCTCCTGACTAAGTAGTCATGTTTTTAATTGAATTCAAAGTTGTTGCTGAAATAAGTATGATGATCAAGATTTAACAGGTTTTAATTAGTTAGATTCAGGCTAAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTGTGGAGAGGAAAACAAAATTTGAATGGGAATATTGGTGATTTTGGCTGTGATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCAAGTGCCTATCCAATTCAACATCTACACAAATGAATAATCAACATAATGTACTCTCCCCTAGATCCAAGCCCTACATAACACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAAGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACCTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCATCTTGTTTGGCAATTTTCATAATTTCTGTATCAGGGACAGGCACACGGTTAAATGTGTCTAAAATGACGATCTCTCCATTCATACTGCGTCCAACATGGAAGGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGGCGAAATAATAATGTCTT # Questionable array : NO Score: 8.58 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2978120-2977560 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046653.1 Bacillus sp. ms-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2978119 32 100.0 33 ................................ ATAAATTGCTGGATCATCAGCACGTCGAGCGAT 2978054 32 100.0 35 ................................ TTCTTCATCCTCTAAATTCTCAATCATTTCTACCT 2977987 32 100.0 34 ................................ TAGCAGCTGTTTCCCAATTGCTTCGAAAGCTTTC 2977921 32 100.0 34 ................................ ACTTTGATCACTCCATGTGATATAATTAAGATTC 2977855 32 100.0 35 ................................ CGCTTCCTCCCCAAATTGTTTTAGCCATTCTTTGT 2977788 32 100.0 35 ................................ CGCTTCCTCCCCAAATTGTTTTAGCCATTCTTTGT 2977721 32 100.0 33 ................................ ACGAAAGAGAGAGTAACTGGTTCAGCTCACATT 2977656 32 87.5 33 ...........T......A.A..T........ AATCGTGTTAAGTAGATTAAATCTATTAATTAT 2977591 32 71.9 0 ........TG.T.....CAT...A...A.G.. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 95.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACAGTAAAGGGAGCATTCAAAGTAGATGTCATGACACCACATCATTCAGACTACAACAGCGTTAAGCTAGATAAGATGAATCAAAGGAGAAGTGTTCCAGCTCCTCGAGACGATGACTCACCGACACCCATTCATTTCTTAACGGTGGTCAATGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAGTCTACCAGAAGAAACGGAATGGCTCGAACTGGCCAAAACCATCTTACTAGGAGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTGAAATAGACGACGTCATTTCATAAGACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGAAACATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATAATTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTACAATTAAGGCGAAAATCGCC # Right flank : CCTCGTCAATAGGTAGCTAAAAAGGAATATTAACAATTCCGCATGATATAAGTGTTAAAAACATAACGCTTTCTCCTGACTAAGTAGTCATGTTTTTAATTGAATTCAAAGTTGTTGCTGAAATAAGTATGATGATCAAGATTTAACAGGTTTTAATTAGTTAGATTCAGGCTAAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCGGGGCATTCGCACCTTTTTATTCGACAAAATTGAGAAAAAATGTATATTTTGTGGAGAGGAAAACAAAATTTGAATGGGAATATTGGTGATTTTGGCTGTGATTACCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATTGCTTCCTGTTCTCTATCCACATCAAATGCTTCCGTCGCACTCTACATGAGTGCGTGGATTGAAATATCTGATCGATCTCAAGGGTGGTATCGAGCTAGGGTCGCACTCTACATGAG # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2986184-2985814 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046653.1 Bacillus sp. ms-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2986183 32 100.0 34 ................................ CCACCAAATGCAATTGCCAATGTAAACGTAATAA 2986117 32 100.0 35 ................................ ATTGTGAATGTATAAGAGTTTGAGCGCTTTTTGTT 2986050 32 96.9 35 .....A.......................... ATCTTGATCACTAACGAGTTTTAAAGAGCCTGGAA 2985983 32 90.6 36 .....A.....T..........A......... TGGGTTGTCAGTGATAAGTGAGTGAATTTCCGAAAC 2985915 32 93.8 34 .....A.............T............ ATGCAGTGACCTCCTGAATGTATGATGAATTGTT 2985849 32 81.2 0 .....A.C...T............T..TC... | AC,G,A [2985825,2985831,2985840] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 93.8 35 GTCGCGCTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGCGTGGATTGAAATTTAGGAATCACAGTAGATGAGTTAGATAAAAATAGTCGCACTCTACATGAGTGCGTGGATTGAAATCTTTAATCGTTTCAATGATTGTGTGACCGTGTTCGTCGCACTCTAAATGAGTGTGAGATTGAAACCCTCATCAGTAGGTAGCTAGAAATATATATTGACAATTGTGTTTGATATAGGTGTGAAAAAACATGACTGACTCAATAGTCATGTTTTTTATGAATTCAAAGCTGTTGATGAAACACTGAAATAAGTATAATTATCAAGAGTAATAGTTGTTAATTAAAATTAAATAGGATTAAAAAAGATTCGGTGCGAATGTGGGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTCTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCCAAAAAATGTTACAATTAGGGTGGAAATCGCA # Right flank : GATTGTGTCTTAAACGGTTATGACTACCTTAAAGATCATCTTCTTACAACACCCTCTTTCAGATACAAAAGCCATCAGAATATACTGTTCATTTGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTATTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAGTGAATGGTGAAGGAGGAAATGGTTTGGGTGAAACGGAGCGAACTGGTAAAGTTGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCAGAAGAAGTGGACTTTGCTTCTAATCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGCTGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCATTAGCACAAGGGGTCATCATTATTGACTCAGAAGGAAGACATTCGAACGAAGTCGATATTGCCGTATTTGATG # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2986766-2986537 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046653.1 Bacillus sp. ms-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 2986765 32 100.0 34 ................................ TGTTATTGCTAATAGAGCTATTGCAACCGATTGT 2986699 32 100.0 34 ................................ TTAGGAATCACAGTAGATGAGTTAGATAAAAATA 2986633 32 100.0 34 ................................ CTTTAATCGTTTCAATGATTGTGTGACCGTGTTC 2986567 31 84.4 0 ...........A.......T.A.-.......C | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.1 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CTGCAGTAACAGTCGCACTCTACATGAGTGTGTGAATTGAAATATATGATCTAGCGTTAATTTTTGTGTGGTCATGTCGCACTCTATATGGGTGCGTGGATTGAAATTCTGTGGTGTTGGGTATTTTTTGTAGTGTTCTTCGGTCGCACTCTACATGAGTGCTTAGCCATTCTTGATTTTAGGTAAGAGAAAACATAGTTAAAGTTAAAGCATGTATGTTTGATCGGAAATTATTAGTGGAGTAACTATACTGATTAAAATTTACTTTTCCTCAAAGATTGGGAGAAGAGTAGTCATTTTAGTTAATAGAGTCAATGAATTAAAAACTTGGTGCGAATGTGAGGTGATCATAAAATCCCCGGGACATTCGCACCCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCA # Right flank : CCTCATCAGTAGGTAGCTAGAAATATATATTGACAATTGTGTTTGATATAGGTGTGAAAAAACATGACTGACTCAATAGTCATGTTTTTTATGAATTCAAAGCTGTTGATGAAACACTGAAATAAGTATAATTATCAAGAGTAATAGTTGTTAATTAAAATTAAATAGGATTAAAAAAGATTCGGTGCGAATGTGGGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTTTCTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTTCCCAAAAAATGTTACAATTAGGGTGGAAATCGCAGTCGCGCTCTACATGAGTGCGTGGATTGAAATCCACCAAATGCAATTGCCAATGTAAACGTAATAAGTCGCGCTCTACATGAGTGCGTGGATTGAAATATTGTGAATGTATAAGAGTTTGAGCGCTTTTTGTTGTCGCACTCTACAT # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 2988141-2987908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046653.1 Bacillus sp. ms-22 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2988140 32 100.0 35 ................................ TTTGTAATAACCGTCACCGCGACACCAGCCATAAT 2988073 32 96.9 34 .......................A........ AAAACATAGTTTTTAGCAACTCGTTTCGCATTAG 2988007 32 100.0 35 ................................ ATTGACGCTGTACTTTCATATAGGCTGTCATATTC A [2987995] 2987939 32 84.4 0 ....A........A.....GA..........A | ========== ====== ====== ====== ================================ =================================== ================== 4 32 95.3 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATCGCTGACCGGCTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAAAGAAGACAAAATCACCAATGGAGAAATGGAAAAACTCATTGAAACCTTTACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTGATCGAAAAAGTAGACTGGCTGATTTATCAAGAAGTACCTGGTTTTTGGGAATTTATTGTGGATTATCTAACGAAGTTGTAAAAGAGGCTGATGGTGCGAATGTGAGGTGAACATAAAATCCCCGGAGCATTCGCACCTGTTTATTCGACAAAATTGAGAAAAAATGTATGTTTTATGAAAGGGAAAACAAAATTCTTTATTGAAATTTGTGGATTTTGCCTATCATTCCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : TTTGAATTGGCAGCATCATAGACCAAGCACCCCCGGACTGGCCCAGTAGTCCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTTATTCGACGAAATTGAGAAAAAATGTATATTATTTAGAGGTGAAATCAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTACCTAAAAAATGTTATAATTAGGGCAGAAATCGCAGTCGTACTCTACATGAGTGCGTGGATTGAAATTTTCTATTTTCATCAGACGATTTTACAAAACGAAGTCGTACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGACCCACGTGCATATGGGGTGGTCGCACTCTATATGAGTGCGAGGATTGAAATCCGCCACAACAACAACA # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //