Array 1 11-279 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKR01000062.1 Yersinia pseudotuberculosis strain LFB2015W0M68/I79 NODE_62, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 71 28 100.0 33 ............................ CCTGCCTGAATAGGGTGCATCAGCAAACCAAAT 132 28 100.0 32 ............................ TCAAAAACCTGATGGCAGTGGCCCGGCAATAT 192 28 100.0 32 ............................ TCAGGCTGGCGGCGAAATCACCACCTTTGCAT 252 27 89.3 0 .....................CC.-... | T [278] ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTGCCAATACG # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72372-74322 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKR01000008.1 Yersinia pseudotuberculosis strain LFB2015W0M68/I79 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72372 28 100.0 32 ............................ TGCAAAGCCTCAAGCAATTCCGGTGAGGCTGC 72432 28 100.0 32 ............................ ATCTTCACTGCAGCTATAACGTATCCGTAGCA 72492 28 100.0 32 ............................ GGTCGACCAGCGCCGGGGACGTTTGGCGGAAG 72552 28 100.0 32 ............................ TGCGCCGGAATGGATAGGAATAACTCCTTAAC 72612 28 100.0 32 ............................ AGAGTCAGTTGTTAACTCACTGAATGGTGATG 72672 28 100.0 32 ............................ GCCAATAAGTGATAGCGCTCCCCTTGCCAATC 72732 28 100.0 32 ............................ TTACCGGCATCATACCGGGCATGTATTTCATG 72792 28 100.0 32 ............................ AAGCGTTAGCTTCCGGGGTTCTTCGCGGGGAA 72852 28 100.0 32 ............................ GTTAGAGCAATTACAAAGGCATTAATTATTGG 72912 28 100.0 32 ............................ TGTTCACCGTGACGCTTGGTAAGCCAGTCGAT 72972 28 100.0 32 ............................ AGTTCCATATCAACGGATTCACATAACGCTTC 73032 28 96.4 32 A........................... AGAATATCCTTACGGTTGGTGTTGATGTGCCA 73092 28 100.0 32 ............................ ATGAAGTCAACTGACCGACAAAGCCGGGCGGG 73152 28 100.0 33 ............................ ACTTGCAGCGCATGAAGTATGCAAGAGAATTAA 73213 28 100.0 32 ............................ GCATCTTGCAGCGGGAGGAGGGGAAGAAGAGT 73273 28 100.0 32 ............................ ATAGCCACCACTTAATTATCATCATCAATCAA 73333 28 100.0 32 ............................ TATCGTTGATGATATTGTGATGAACGGTGGTT 73393 28 100.0 33 ............................ GCGATAATATTTTCATTAAGTTTCGCTATCCGG 73454 28 100.0 32 ............................ ATCAACCACACCATCGGCTGTGTGATGCTTAA 73514 28 100.0 33 ............................ ATTATCTGAGTAGATATCTTTAGTAAGAATACA 73575 28 100.0 32 ............................ ATATGAGAAACGTTTCACAAGTGAAATAGCTA 73635 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 73695 28 100.0 32 ............................ TATGGTAAAGCCAACTTATCCAGACATACCAC 73755 28 100.0 32 ............................ TATTTCGGAGGTGCTAAATAATGGCTCGTTAT 73815 28 100.0 32 ............................ ATATTCATCCAGCGGGACCGCTGATGTTTATT 73875 28 100.0 32 ............................ GGATTGATCGGGTGATTCTTCATGCGGCATCT 73935 28 100.0 32 ............................ TACACCACCCCACAGTTGAACTCTCCGGAGAT 73995 28 100.0 32 ............................ ATATAGAGAGTTTAAAAACAGTTTACCTAACG 74055 28 100.0 32 ............................ TTGCGGTAATCGCTCCACGATGGGATTTTGAA 74115 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 74175 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 74235 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 74295 27 85.7 0 ...................-A.A.C... | T [74319] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6578-7987 **** Predicted by CRISPRDetect 2.4 *** >NZ_MNKR01000081.1 Yersinia pseudotuberculosis strain LFB2015W0M68/I79 NODE_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6578 28 100.0 32 ............................ CTGTGATAGCAATCCGTTGACTATAACGTCAG 6638 28 100.0 32 ............................ AAGGGTTCATTGGCAGAAGCACTTGCATTACA 6698 28 100.0 32 ............................ CAAGAAAAGACACGCCAAATATCTGAGCAGTA 6758 28 100.0 32 ............................ ACAGCCAATCTACTTCCGTTCTCTGAGATTGA 6818 28 100.0 32 ............................ AGACGAAGAGCCACGCCAACGTAAACGTAAGA 6878 28 100.0 32 ............................ TATCTCAGATGGCGAGCCTGTATCGCACTCAT 6938 28 100.0 32 ............................ TAATCATGGATGAGGTTGGAATAAAACTATCA 6998 28 100.0 32 ............................ AAGTAAGGCACAGAAGGTTGTCACAATGACAA 7058 28 100.0 32 ............................ AACACTAAGGGATTATTACCAGATACAGGTGA 7118 28 100.0 32 ............................ AAATTATCTATAAACATAAACTGACTTTGAAT 7178 28 100.0 32 ............................ AATTCGGTATCGGTAAATTCATCAAGTATTTC 7238 28 100.0 32 ............................ TACAGCGGGCCAACTATTAGTAGATAGAGTTA 7298 28 100.0 32 ............................ CCAGATAAAAACCTGATCACCCTCATCATCAT 7358 28 100.0 32 ............................ ACTTTAAAGTCGAGAATGTTTTCCCCGCTCCT 7418 28 100.0 32 ............................ CATTGAAATAATGGTTACTGGTAACGGACAAG 7478 28 100.0 32 ............................ AGAATAATCAACGCCATTAGGGTTTAAAGGTA 7538 28 100.0 32 ............................ GCATTGCTTCAGATGCCGGTCAGGTTGTACGA 7598 28 100.0 32 ............................ CCCGTATTTTTGAGTGCCAGCTGCTTCCTGCA 7658 28 100.0 32 ............................ ATTTATCGCCTGACTTGACAATCATGACTTAA 7718 28 100.0 34 ............................ CCGATGGTCCGGCAATACCGATAACCACTTTTGA 7780 28 100.0 32 ............................ AACAACGCCGCAGACGCAACCAGTGCCAATAC 7840 28 100.0 32 ............................ CAAATGAGATTAAAGCATCAGTGCAGTACATG 7900 28 100.0 32 ............................ CTTGGAATACAGATTATTGCTGGTACTGTCAA 7960 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCACCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAAGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : TATGGTAAAGCCAACTTATCCAGACATACCACGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //