Array 1 10036-8508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOP010000077.1 Photobacterium damselae subsp. damselae strain 189bp-OG7B Contig_000077, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10035 28 89.3 32 .A..G...............T....... ACCTTTTCTAAACATGGTGAATTAAAATAAGC 9975 28 100.0 32 ............................ TTCGGATGCTATCGAAAAGTTATGCGGTGATT 9915 28 100.0 32 ............................ TAAATACAGAACCCGCCTCTGTCTTGTGTAAC 9855 28 100.0 32 ............................ TGTAACTTGTGGCGGTCGTAAAGGTGCGCGAC 9795 28 100.0 32 ............................ TGGTACATGATACTAATCTCTGTTGCAGAGCG 9735 28 100.0 32 ............................ AAATGCAACTCGACTATCAGCGTCTAAAATAA 9675 28 100.0 32 ............................ TTGCGGATAAAGAAGATCTCTCAAATAAAATC 9615 28 100.0 32 ............................ AGTTTTTGAGTAGTAAAATCTAACTCAATTTG 9555 28 100.0 32 ............................ ATATCCAGTTGGTAAATATAAATTGGATTTGC 9495 28 100.0 32 ............................ TGGTTCGGGATCAATCAGTGTTGGATCAACAA 9435 28 100.0 32 ............................ TGTCTGCTTCTGACATGGCCAATGCGATTGTG 9375 28 100.0 32 ............................ TATGGTCCTCGCGGTCAGCAACAGTTAACCGG 9315 28 100.0 32 ............................ TGCCGAACGCGCAAATGCCGCCATTGCCCTGT 9255 28 100.0 32 ............................ GAAAGCTTTCCGAGTATTTTGCCGCCCAGAGT 9195 28 100.0 32 ............................ GTTAAATAACCAACAATAAAAAATACAGCTAA 9135 28 100.0 32 ............................ AACTGCTTCAAGAAAAGCACCCTGATGTAGAG 9075 28 100.0 32 ............................ AGTCTGCGAATTCGTTTGCTAGTTGCTTTAGT 9015 28 100.0 32 ............................ GTTATAGCGCAGCTCTTTTGGCGCGAATGATT 8955 28 100.0 32 ............................ AAGTACACAGCGTCGGATCTTTCCATGATGTC 8895 28 100.0 32 ............................ ACACCGTAAAAGCCTGCCGTCGCATGTATTAA 8835 28 100.0 32 ............................ TCAAATCCTCGCACGCTGTGATGGTTTTTCAA 8775 28 100.0 32 ............................ GATCTCTCTGATAGCAAGCGTATTAGGGCTAG 8715 28 100.0 32 ............................ AGCACTACGACACCCAAGCGAAGAAGCGTATT 8655 28 100.0 32 ............................ TCGATGAAGCCGATACCCTCTTTGAATCATTA 8595 28 100.0 32 ............................ TTGAGTATCTTTGTTGAAGTGAAATCGCTTTT 8535 28 96.4 0 .................T.......... | ========== ====== ====== ====== ============================ ================================ ================== 26 28 99.5 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TGCTTGCGGCTGGCA # Right flank : AATCCACTGCAGATCGGGGCGTTACTCCCTTTCTTCACTACCGAATAGGTAGATAAAACTTAGACATATTTTACTCTTTAATCTGATATTTCGTCATTCTTGCTAATAAAGTCGCATTTTAAATTCATCCTGTTGAATATACTAATGCCATGATAGTTAACGCATTGATATGATGTTAAAGATGAAAAAGGACTTTTCTCCTAGCGAGCTTAAAACCATACTCCACTCAAAACGTGCCAATCTTTATTATCTTCAGCATTGTCGAGTGTTAGTAAACAGTGGGCGAGTTGAATATGTTACTGATGAGGGTAAAGAGAGTTTATATTGGAATATCCCCATCGCCAATACGACCACCATTATGCTTGGAACGGGTACATCGGTGACTCAAGCTGCCATGCGAGAGTTGGCTAAAGCTGGTGTATTAGTCGGTTTTTGTGGTGGCGGTGGTACTCCGCTTTTTTCAGGTAATGAAGTTCAAGTGGATGTCTCTTGGCTTTTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 28140-27751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOP010000117.1 Photobacterium damselae subsp. damselae strain 189bp-OG7B Contig_000117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 28139 28 100.0 32 ............................ TCTATCACTGAGCAGCGCCAGCAACAGCAACA 28079 28 100.0 32 ............................ TTTAATTTACTGATTAATAAAACTTTTTAGAT 28019 28 100.0 32 ............................ TCCGTTACAGCTAAACAAACAGCAAGGTGAGC 27959 28 100.0 32 ............................ AACTACAAGGCGCTATTCTTCGCTAAGACTGA 27899 28 100.0 32 ............................ TAAGCACATCAAGAAAGGTCACCAACTTGTAA 27839 28 92.9 32 .......A.........T.......... CCGTCTAGTAACACGGGTTGAAAGTCTTAATG 27779 28 82.1 0 ...........CA........C..CT.. | A [27756] ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : TTCATTAAAGGTGTTACGCC # Right flank : GTAAACTTTGGAGCTAACCTTTGCTTTTGGTATCCTTGGTGCTTATCGCTAAGATTATTAGCAAAAGCATAAATATAGGTACTACATGCTCATAATCTCAAACAATGTGACGATTTCCGATTGGGAGATTGAACTTAACGCTATTCGCTCTGCGGGAAATGGTGGGCAAAACGTCAATAAAGTAGCCACAGCAATTCATCTTAGATTTGATATTAAGAAATCATCACTGCCTGCTATTTATAAAGAAAAATTACTTAAGCTATCAGACAGTCGAATTTCTTCTGATGGTGTGATCATCATTAAATCGCAGCAATATCGAACCCAACTGCAAAATAAAGAAGCTGCTCTTGAGCGATTAAAAGAATTGATTTTATCTGCGATGGTTGTACAGAAAGCCCGCCGTCCAACTAAGCCAACCAAAAACTCCCAGCGTCGTCGTTTAGAGTCTAAAACCAAAAGGGGAACGACTAAAACGATGAGAAAGAAGGTTGATTTCTGAG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3829-4394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXOP010000082.1 Photobacterium damselae subsp. damselae strain 189bp-OG7B Contig_000082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3829 28 100.0 32 ............................ AGAAACGTTACGACCCACCATAATTGCACGAG 3889 28 100.0 32 ............................ ATTAAGAACGGTGAAGCACTAAATGGTCGATT 3949 28 100.0 32 ............................ GAATGAGCAACCCACTTTTCAAGAAAACTCTT 4009 28 100.0 32 ............................ ACTGTTTCCGTGTCTATGCTTGCGGCTGGCTC 4069 28 100.0 32 ............................ ACTAAGTAGGTGAATTATGAGAATTATATCTA 4129 28 100.0 32 ............................ AAACAGCGCATTCCATGCCGCGCCAAGGGTGT 4189 28 100.0 32 ............................ ATTACTCCTGTTACTGGTATTTCATGCATAAA 4249 28 100.0 32 ............................ AAAAAGAACGTAGCAAGAAAGATAAGCTCTCT 4309 28 92.9 32 .............G......G....... TGGTACATGATACTAATCTCTGCTGCAGAGCG 4369 26 89.3 0 T.........................-- | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 CTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGTGTAGATCTAAAAGTCTCAAACTGTCATCTAATAATCTTTATTTTGATTCTTTTTGTGATTATTTTAAGCTGGATTCAAAAGGGACCAAAAGTAGGCGGTTAAGTTCAAGGAGTGATCATGTCTTCAATACCAACAACAAAAGAGGAATTGGAAAAAGCAATTAATGATTCTTTTTCTAAATTACTCATAGACTTAAAAGCAATACCTGAATCTGAATCGCGGACACATTCTCGTCATTATCTAATCATCAACTCTATCAAGAACCATGGTACGAAAAATGGACGTTAGGGCGAATGATTCAGTTTAATACCTCATCGCCAATGAAAAATGTAAGAACTAAGGTACGAAGATTTAAAAGAGGGATGTGACCCTATTTTTTGACTTATTTATAAGTTATTGATTTATAAATATGTAAAATAGGACGCAGAAAAAAGGGTATTTTAGAATAAAGTGGTCTAAGTTCTTTAAAAATAAACCGAAATAGAATAAAGTCTTCA # Right flank : | # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //