Array 1 45471-46232 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOL01000015.1 Escherichia coli strain MOD1-EC6201 MOD1-EC6201_15_length_131325_cov_67.7538, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45471 29 100.0 32 ............................. AGCCTGCACTGCTACTTGAGCCGGATTTTTTC 45532 29 100.0 32 ............................. ATGTCCTAAACCTTCCCATGTTTCGGCCCCAT 45593 29 100.0 32 ............................. CCATGCGCAGTGATTCAAGTCGGCGCGCATCA 45654 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 45715 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 45776 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 45837 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 45898 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 45960 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 46021 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 46082 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 46143 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 46204 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 13 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71781-73211 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOL01000015.1 Escherichia coli strain MOD1-EC6201 MOD1-EC6201_15_length_131325_cov_67.7538, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71781 29 100.0 32 ............................. TTTTTTTCCTGCTTTCTGTGCGGCGTTAACAT 71842 29 100.0 32 ............................. TTCTCGTTTAAATGAAGATATAAAATCTCCAT 71903 29 100.0 32 ............................. CGGTACACGAACTGGCAGATCTCCCCGCTGAC 71964 29 100.0 32 ............................. TCAGATCCGTACACTCTGCAAAACTCGCAATA 72025 29 100.0 32 ............................. GGCTAATTTTATTTTTTGCGTAGCGAGCGAGG 72086 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 72147 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 72208 29 100.0 32 ............................. CGGCGGCAATTGATGCGAAAGACCTTGGCAAT 72269 29 100.0 32 ............................. CAGCTCGTTCGCATGATATGTACCCGAGACGG 72330 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 72391 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 72452 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 72513 29 100.0 32 ............................. GTTCTGCGCAGGGTTCACGAATGCGTGTTAAC 72574 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 72635 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 72696 29 100.0 32 ............................. TCCACAGGTCGGAGAGGCTTTTCGTCATGTTG 72757 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 72818 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 72879 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 72940 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 73001 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 73062 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 73122 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 73183 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.4 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACGCCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //